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Wine grape
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Wine grape
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • plasma membrane 1
  • plastid 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane, plastid
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:cytosol, plasma membrane, plastid
Predotar:plastid
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G52120.1 VIT_18s0001g14860.t01 AT5G42190.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU1Hr1G048690.1 Barley peroxisome 41.22 67.65
KRH09123 Soybean cytosol 62.72 60.55
VIT_15s0048g01930.t01 Wine grape cytosol 62.37 60.21
HORVU2Hr1G094960.4 Barley cytosol 42.65 60.1
KRG91447 Soybean cytosol, plastid 62.72 59.73
KRH38594 Soybean cytosol 61.65 59.52
KRH35368 Soybean cytosol 63.44 59.4
Solyc03g026160.2.1 Tomato cytosol, extracellular 32.26 59.21
GSMUA_Achr5P03300_001 Banana cytosol 61.65 59.11
GSMUA_Achr4P27200_001 Banana cytosol 59.86 58.19
GSMUA_Achr11P... Banana cytosol 59.14 57.69
Zm00001d029673_P001 Maize plasma membrane 60.93 57.43
HORVU1Hr1G048700.4 Barley cytosol, nucleus, plasma membrane 62.01 57.28
VIT_02s0025g04380.t01 Wine grape cytosol 63.44 57.28
Os03t0116700-01 Rice cytosol, extracellular 60.93 57.24
EER94629 Sorghum plasma membrane 61.65 57.14
TraesCS1D01G187700.1 Wheat cytosol, plasma membrane 61.29 57.0
AT5G52120.1 Thale cress cytosol 59.14 56.7
TraesCS1B01G196400.1 Wheat cytosol, plasma membrane 60.93 56.67
GSMUA_Achr3P12400_001 Banana cytosol 58.42 56.6
EER95641 Sorghum cytosol 59.5 56.46
TraesCS1A01G188700.1 Wheat plasma membrane 61.29 56.25
Os09t0525300-01 Rice cytosol 56.63 56.23
GSMUA_Achr1P03900_001 Banana cytosol 58.78 56.16
CDY38901 Canola cytosol 55.56 55.76
GSMUA_Achr7P05860_001 Banana cytosol 57.71 55.52
CDY32595 Canola cytosol 57.35 55.36
GSMUA_Achr4P24870_001 Banana cytosol 59.86 55.12
TraesCS5D01G319500.1 Wheat cytosol 56.63 55.05
Zm00001d027361_P001 Maize cytosol 58.78 55.03
TraesCS5B01G313700.1 Wheat cytosol 56.63 54.86
TraesCS5A01G312700.1 Wheat cytosol 56.27 54.7
HORVU5Hr1G080530.1 Barley cytosol 56.27 54.7
TraesCS5A01G525700.1 Wheat cytosol 59.86 54.58
Os02t0675800-01 Rice cytosol 58.06 54.55
Bra029137.1-P Field mustard cytosol 56.63 54.48
TraesCS4B01G356300.1 Wheat cytosol 59.86 54.4
PGSC0003DMT400037131 Potato cytosol 57.71 54.39
Zm00001d021224_P001 Maize cytosol 57.35 54.05
TraesCS4D01G350000.1 Wheat cytosol 59.14 53.75
GSMUA_Achr11P... Banana cytosol 34.77 53.59
VIT_08s0007g04190.t01 Wine grape cytosol 57.35 53.51
EER99217 Sorghum cytosol 57.35 53.51
KXG31015 Sorghum cytosol 57.71 53.49
Os04t0571300-01 Rice cytosol, mitochondrion, peroxisome 58.06 53.29
TraesCS6A01G256100.1 Wheat cytosol 56.63 53.02
TraesCS6D01G237300.1 Wheat cytosol 56.63 53.02
TraesCS2A01G400100.1 Wheat cytosol 56.63 53.02
Zm00001d051447_P002 Maize cytosol 55.91 52.7
TraesCS2D01G397700.1 Wheat cytosol 56.27 52.68
TraesCS6B01G269300.1 Wheat cytosol 56.27 52.68
TraesCS2B01G418200.2 Wheat cytosol 56.63 52.15
HORVU4Hr1G086110.1 Barley cytosol 27.24 50.0
EES11284 Sorghum cytosol 54.48 48.56
Os10t0522400-01 Rice cytosol 27.6 46.67
Zm00001d026078_P001 Maize cytosol 47.31 45.67
Zm00001d021854_P001 Maize cytosol 13.62 43.18
Zm00001d024256_P001 Maize cytosol, mitochondrion 37.99 42.57
Os02t0224900-01 Rice endoplasmic reticulum, extracellular 32.97 38.82
Zm00001d035636_P001 Maize plastid 36.2 38.7
HORVU5Hr1G055050.1 Barley mitochondrion 22.94 37.65
HORVU2Hr1G049730.1 Barley cytosol 22.22 36.47
VIT_00s0214g00060.t01 Wine grape cytosol 25.09 24.39
VIT_14s0060g02020.t01 Wine grape cytosol 24.73 24.21
VIT_14s0060g01990.t01 Wine grape cytosol 24.01 24.19
VIT_14s0060g02000.t01 Wine grape cytosol 24.73 23.96
VIT_05s0051g00080.t01 Wine grape cytosol 22.22 23.48
VIT_00s0214g00130.t01 Wine grape cytosol 22.94 23.1
VIT_00s0214g00150.t01 Wine grape cytosol 24.37 22.22
VIT_00s0214g00160.t01 Wine grape cytosol 23.66 21.09
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 25.45 20.34
VIT_00s0214g00090.t01 Wine grape cytosol 24.37 20.18
Protein Annotations
Gene3D:1.20.1280.50EntrezGene:100248692wikigene:100248692MapMan:19.2.2.8.1.4.6ProteinID:CCB56466ProteinID:CCB56466.1
InterPro:F-box-like_dom_sfInterPro:F-box_domUniProt:F6HP60EMBL:FN596000GO:GO:0003674GO:GO:0005488
GO:GO:0005515InterPro:IPR001810EntrezGene:LOC100248692wikigene:LOC100248692PFAM:PF00646PFAM:PF14299
InterPro:PP2-likePFscan:PS50181PANTHER:PTHR31960PANTHER:PTHR31960:SF5SUPFAM:SSF81383TIGR:TC70161
UniParc:UPI00015CCC58ArrayExpress:VIT_16s0100g00520EnsemblPlantsGene:VIT_16s0100g00520EnsemblPlants:VIT_16s0100g00520.t01unigene:Vvi.8451RefSeq:XP_002279586
RefSeq:XP_002279586.1:::::
Description
No Description!
Coordinates
chr16:-:16005998..16008266
Molecular Weight (calculated)
31936.3 Da
IEP (calculated)
7.871
GRAVY (calculated)
-0.283
Length
279 amino acids
Sequence
(BLAST)
001: MGAVFSAACA QPPSTGLSDV PENCVAEVLM YLDPPQICNL ARLSKTFHMA SSADFVWESK LPSNYKFLVK KLLAEDPENL SKKEIYARLC QANSFDGANK
101: EVWLEKSYGG ICFAVSWKAL RITGIDDRRY WKHLPAEESR FHSMAYLQQI WWFEVEGELE FEFPAGTYSI FFRIQLGKTS RRLGRKVCNI ERVHGWDIKP
201: VRFQLSTSDG QHALSQCYLC EPGKWVHYHA GDFMVEKPNT SMKVKFSMTQ IDCTHTKGGL CLDSVFICPA EYRDRVKNL
Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)
001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ
Arabidopsis Description
AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.