Factsheet for VIT_00s0214g00130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT2G02300.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT2G02300.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G02360.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0214g00150.t01	Wine grape	cytosol	72.2	65.36
VIT_00s0214g00060.t01	Wine grape	cytosol	53.07	51.22
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	62.82	49.86
VIT_00s0214g00090.t01	Wine grape	cytosol	57.04	46.88
Solyc04g050990.2.1	Tomato	cytosol	50.18	46.8
Solyc05g055870.2.1	Tomato	cytosol	51.99	46.75
CDY09378	Canola	cytosol	45.49	46.67
PGSC0003DMT400060018	Potato	cytosol	52.35	46.33
CDY24793	Canola	cytosol	24.19	46.21
KRG92586	Soybean	cytosol, plastid	50.54	46.2
PGSC0003DMT400031292	Potato	cytosol	49.46	46.13
AT2G02360.1	Thale cress	nucleus	45.13	45.96
VIT_00s0214g00160.t01	Wine grape	cytosol	51.62	45.69
Bra024822.1-P	Field mustard	cytosol	35.74	45.41
CDY63170	Canola	cytosol	40.79	45.38
CDY17599	Canola	cytosol	45.85	44.88
AT5G24560.1	Thale cress	cytosol	31.41	44.62
VIT_14s0060g02020.t01	Wine grape	cytosol	45.85	44.56
VIT_14s0060g02000.t01	Wine grape	cytosol	45.85	44.1
CDY09382	Canola	cytosol	42.24	43.98
CDY70803	Canola	cytosol	41.88	43.61
CDY03057	Canola	cytosol	37.18	43.46
VIT_14s0060g01990.t01	Wine grape	cytosol	42.96	42.96
Bra026608.1-P	Field mustard	cytosol	42.96	42.81
CDY09376	Canola	cytosol	29.96	42.78
CDY03056	Canola	cytosol	24.19	42.68
CDY65051	Canola	cytosol	34.3	42.04
CDY09379	Canola	cytosol	37.55	41.94
CDX88110	Canola	cytosol	18.41	41.8
Bra026604.1-P	Field mustard	cytosol	47.65	40.99
Bra024823.1-P	Field mustard	cytosol	41.88	40.56
CDY17600	Canola	cytosol	41.88	40.56
VIT_05s0051g00080.t01	Wine grape	cytosol	38.63	40.53
KRH68844	Soybean	cytosol	46.21	40.38
CDY03058	Canola	cytosol	41.52	40.21
Bra026603.1-P	Field mustard	cytosol	42.24	40.21
CDY17605	Canola	cytosol	42.6	40.14
CDY09375	Canola	cytosol	41.88	39.73
AT2G02300.1	Thale cress	cytosol	40.07	39.08
CDY17601	Canola	cytosol	41.52	38.98
CDY17602	Canola	cytosol	43.68	38.78
AT2G02250.1	Thale cress	cytosol	43.32	38.71
CDY09383	Canola	cytosol	42.24	38.49
AT2G02240.1	Thale cress	cytosol	44.4	38.44
Bra024825.1-P	Field mustard	cytosol	39.71	38.33
AT2G02350.2	Thale cress	cytosol, mitochondrion	40.43	38.1
CDY03062	Canola	cytosol	43.32	37.62
CDY68805	Canola	cytosol	23.47	37.57
CDY03060	Canola	cytosol	42.96	36.96
AT2G02230.1	Thale cress	cytosol	44.4	36.61
Bra026605.1-P	Field mustard	cytosol	34.3	36.4
AT2G02340.1	Thale cress	cytosol	40.07	36.39
CDY03059	Canola	cytosol	43.68	36.34
Bra024827.1-P	Field mustard	cytosol	41.16	36.31
CDY09380	Canola	cytosol	41.52	36.28
AT2G02310.1	Thale cress	cytosol	40.07	36.16
CDY15823	Canola	cytosol	42.96	35.84
Bra026609.1-P	Field mustard	cytosol	42.6	35.33
Bra024824.1-P	Field mustard	cytosol	42.6	35.01
AT2G02320.1	Thale cress	mitochondrion	37.91	34.2
Bra026606.1-P	Field mustard	plasma membrane, vacuole	41.16	32.66
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	22.74	29.17
CDY65052	Canola	cytosol	40.79	26.16
VIT_15s0048g01930.t01	Wine grape	cytosol	24.91	23.88
VIT_16s0100g00520.t01	Wine grape	cytosol	23.1	22.94
VIT_02s0025g04380.t01	Wine grape	cytosol	24.19	21.68
VIT_08s0007g04190.t01	Wine grape	cytosol	23.1	21.4

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100257545	wikigene:100257545	MapMan:35.1	EMBL:AM430926	ProteinID:CAN62662
ProteinID:CAN62662.1	ProteinID:CCB60977	ProteinID:CCB60977.1	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I210
EMBL:FN596523	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100257545
wikigene:LOC100257545	PFAM:PF00646	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278
PANTHER:PTHR32278:SF2	SUPFAM:SSF81383	TIGR:TC63803	UniParc:UPI00019862CC	ArrayExpress:VIT_00s0214g00130	EnsemblPlantsGene:VIT_00s0214g00130
EnsemblPlants:VIT_00s0214g00130.t01	RefSeq:XP_002270580	RefSeq:XP_002270580.1	:	:	:

Description

No Description!

Coordinates

chrUn:+:13399864..13403735

Molecular Weight (calculated)

31313.2 Da

IEP (calculated)

4.478

GRAVY (calculated)

-0.196

Length

277 amino acids

Sequence
(BLAST)

001: METESIIQAN SSKFGAGVDF SALPEDCIAG ILARTSIRDA CRMSTVSPEF LSAAESDALW ETFLPADYRE IIGRSSESSA RQDFSSKKEL FFRLCNSPLL
101: IDGGKKSFWL DKESGKKCYM IAARELTIIW SETPRYWTWI SPPQSRFTEV ANLKIVWWFV IKGKMNTCML SPCTNYAAYL IFQRNDIFDG FEDNPIESSI
201: GVTGGETAKK VIYLDPEHDI SPNPTRIDGW YEVELGEFFN EGRESVELEM SIMEVNTFIG KSGLLIEGIE IRPKFCS

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.