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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17600 Canola cytosol 97.55 97.55
CDY09382 Canola cytosol 73.78 79.32
CDY70803 Canola cytosol 73.78 79.32
CDY09378 Canola cytosol 65.03 68.89
CDY09380 Canola cytosol 75.87 68.45
CDY63170 Canola cytosol 57.69 66.27
AT2G02240.1 Thale cress cytosol 72.03 64.38
CDY03057 Canola cytosol 50.7 61.18
CDY17599 Canola cytosol 60.49 61.13
CDY65051 Canola cytosol 47.55 60.18
CDY09379 Canola cytosol 51.4 59.27
CDY24793 Canola cytosol 28.32 55.86
CDY09375 Canola cytosol 52.45 51.37
CDY03056 Canola cytosol 27.97 50.96
CDY65052 Canola cytosol 75.52 50.0
CDY17605 Canola cytosol 50.7 49.32
CDY17601 Canola cytosol 50.35 48.81
CDY09376 Canola cytosol 32.52 47.94
CDY09383 Canola cytosol 49.3 46.38
CDY03062 Canola cytosol 51.05 45.77
CDY15823 Canola cytosol 52.8 45.48
CDY17602 Canola cytosol 48.6 44.55
CDY03060 Canola cytosol 49.3 43.79
CDY03059 Canola cytosol 49.65 42.64
CDY68805 Canola cytosol 25.17 41.62
VIT_00s0214g00130.t01 Wine grape cytosol 40.21 41.52
Solyc04g050990.2.1 Tomato cytosol 42.31 40.74
PGSC0003DMT400031292 Potato cytosol 41.96 40.4
VIT_00s0214g00060.t01 Wine grape cytosol 40.21 40.07
KRG92586 Soybean cytosol, plastid 41.61 39.27
CDX88110 Canola cytosol 16.43 38.52
CDX87293 Canola cytosol 34.27 38.28
CDY39994 Canola cytosol 34.27 38.28
CDY62670 Canola cytosol 3.85 37.93
VIT_00s0214g00150.t01 Wine grape cytosol 40.56 37.91
KRH68844 Soybean cytosol 41.26 37.22
Solyc05g055870.2.1 Tomato cytosol 39.16 36.36
CDY31110 Canola plastid 34.27 36.3
CDY72024 Canola plastid 34.27 36.03
CDY71953 Canola cytosol 34.97 35.97
PGSC0003DMT400060018 Potato cytosol 39.16 35.78
CDX95006 Canola cytosol 34.62 35.61
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 43.36 35.53
CDY38992 Canola cytosol 33.92 34.28
CDY54100 Canola cytosol 33.92 34.28
VIT_00s0214g00090.t01 Wine grape cytosol 39.16 33.23
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 21.68 28.7
CDY32595 Canola cytosol 27.27 26.99
CDY38901 Canola cytosol 26.22 26.98
CDX89095 Canola cytosol 26.57 26.57
CDY42484 Canola cytosol 26.22 26.32
CDX73584 Canola cytosol 25.17 24.83
CDY57080 Canola cytosol 24.48 24.82
CDX78140 Canola cytosol 25.52 24.25
CDY45973 Canola cytosol 24.48 24.14
CDY63226 Canola plastid 24.13 23.79
CDX98047 Canola cytosol 23.78 23.69
CDX79690 Canola cytosol 23.78 23.13
CDX84551 Canola cytosol 23.43 22.79
CDY47354 Canola cytosol 23.08 22.76
CDY49201 Canola cytosol 22.73 22.41
CDY16361 Canola extracellular 13.99 20.83
CDX95004 Canola peroxisome, plasma membrane, vacuole 21.33 18.89
Protein Annotations
EnsemblPlants:CDY03058EnsemblPlantsGene:GSBRNA2T00115392001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF6
PFAM:PF00646PFAM:PF14299PFscan:PS50181ProteinID:CDY03058ProteinID:CDY03058.1SEG:seg
SMART:SM00256SUPFAM:SSF81383UniParc:UPI0004EBEA06MapMan:35.1::
Description
BnaC07g21690D
Coordinates
chrLK031939:+:675175..676399
Molecular Weight (calculated)
32570.8 Da
IEP (calculated)
5.320
GRAVY (calculated)
-0.361
Length
286 amino acids
Sequence
(BLAST)
001: MMQATMGQNQ GVESRVEDII MTEPSPFDFL PEDCISKIIS FTSPRDACVA ASVSKTFESA VKSDIVWEKF LPPEYSSLIP RSRAFSSKKE LYFALCDDPV
101: LIEEGKKSFW LEKASGKRCI MLSSKEVWIT WGSSPQYWRW VSVPESRFEK IAELLNVCWF EIRAGMHTRY LSPGTRYSVY IVFKTEDGCP GLGDIPVEAG
201: VGLVGQESSQ KLIYFVGPSG RRRDRERRDV TRPKEREDGW MEAELGGLYN ESCCDDISVS VVETKSPYWK RGLIIQGFEF RPAKTQ
Best Arabidopsis Sequence Match ( AT2G02250.1 )
(BLAST)
001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI
Arabidopsis Description
PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.