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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02230.1 CDX68112 AT1G75950.1 12795696
AT2G02230.1 CDX73212 AT1G75950.1 12795696
AT2G02230.1 CDX80590 AT1G75950.1 12795696
AT2G02230.1 CDX85931 AT1G75950.1 12795696
AT2G02230.1 CDX87650 AT1G75950.1 12795696
AT2G02230.1 CDY13521 AT1G75950.1 12795696
AT2G02230.1 CDY39073 AT1G75950.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY17605 Canola cytosol 79.0 85.71
CDY17601 Canola cytosol 70.85 76.61
CDY03059 Canola cytosol 77.74 74.47
CDY17602 Canola cytosol 72.1 73.72
CDY03060 Canola cytosol 71.16 70.5
CDY09383 Canola cytosol 64.26 67.43
CDY15823 Canola cytosol 67.08 64.46
AT2G02230.1 Thale cress cytosol 62.07 58.93
CDY62670 Canola cytosol 5.33 58.62
CDY09382 Canola cytosol 42.63 51.13
CDY03058 Canola cytosol 45.77 51.05
CDY70803 Canola cytosol 42.32 50.75
CDY17600 Canola cytosol 45.14 50.35
CDY09378 Canola cytosol 42.32 50.0
CDY17599 Canola cytosol 44.2 49.82
CDY03057 Canola cytosol 36.99 49.79
CDY09379 Canola cytosol 37.62 48.39
CDY09375 Canola cytosol 43.89 47.95
CDY63170 Canola cytosol 36.99 47.39
CDY65051 Canola cytosol 31.97 45.13
CDY68805 Canola cytosol 23.51 43.35
VIT_00s0214g00130.t01 Wine grape cytosol 37.62 43.32
CDY09380 Canola cytosol 42.95 43.22
CDY09376 Canola cytosol 26.02 42.78
CDY03056 Canola cytosol 21.0 42.68
Solyc04g050990.2.1 Tomato cytosol 37.93 40.74
Solyc05g055870.2.1 Tomato cytosol 39.19 40.58
VIT_00s0214g00150.t01 Wine grape cytosol 38.56 40.2
CDY24793 Canola cytosol 18.18 40.0
KRG92586 Soybean cytosol, plastid 37.93 39.93
PGSC0003DMT400031292 Potato cytosol 36.68 39.39
CDY39994 Canola cytosol 31.35 39.06
CDX87293 Canola cytosol 31.35 39.06
PGSC0003DMT400060018 Potato cytosol 37.93 38.66
CDY72024 Canola plastid 32.29 37.87
CDX88110 Canola cytosol 14.42 37.7
CDX95006 Canola cytosol 32.6 37.41
VIT_00s0214g00060.t01 Wine grape cytosol 33.54 37.28
KRH68844 Soybean cytosol 36.99 37.22
CDY31110 Canola plastid 31.03 36.67
CDY71953 Canola cytosol 31.35 35.97
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 39.19 35.82
CDY38992 Canola cytosol 31.03 34.98
VIT_00s0214g00090.t01 Wine grape cytosol 36.68 34.72
CDY54100 Canola cytosol 30.72 34.63
CDY65052 Canola cytosol 42.63 31.48
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 19.44 28.7
CDY38901 Canola cytosol 24.76 28.42
CDY32595 Canola cytosol 25.39 28.03
CDY63226 Canola plastid 24.45 26.9
CDY45973 Canola cytosol 24.45 26.9
CDY57080 Canola cytosol 22.88 25.89
CDY49201 Canola cytosol 23.2 25.52
CDX98047 Canola cytosol 22.88 25.44
CDY47354 Canola cytosol 22.88 25.17
CDX73584 Canola cytosol 22.88 25.17
CDX78140 Canola cytosol 23.51 24.92
CDY42484 Canola cytosol 21.94 24.56
CDY16361 Canola extracellular 14.73 24.48
CDX89095 Canola cytosol 21.63 24.13
CDX79690 Canola cytosol 21.32 23.13
CDX84551 Canola cytosol 21.0 22.79
CDX95004 Canola peroxisome, plasma membrane, vacuole 20.06 19.81
Protein Annotations
EnsemblPlants:CDY03062EnsemblPlantsGene:GSBRNA2T00115396001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF6
PFAM:PF00646PFAM:PF14299PFscan:PS50181ProteinID:CDY03062ProteinID:CDY03062.1SEG:seg
SMART:SM00256SUPFAM:SSF81383UniParc:UPI0004EEBD08MapMan:35.1::
Description
BnaC07g21650D
Coordinates
chrLK031939:+:687088..691900
Molecular Weight (calculated)
35178.8 Da
IEP (calculated)
4.757
GRAVY (calculated)
-0.368
Length
319 amino acids
Sequence
(BLAST)
001: MKQIQVSDSN SGGRSSRNDE IVSIGASARL DTLPEDCISM VVSHTSPRDA CVAASVSKTV KSAAESDLVW EKFLPQDYSS LVPPRSVDFS SKKEIYMSLA
101: DDSVLIDDGK KSIWLEKGSG KKCYMLSAMD LKIAWIDAPE YWKWKKDPES KFEKVAKLRH VCWFEIRGKI SCGMLSKGTH YFVYAVLKIG GSGSRGLDDT
201: PMEAQVGFVG EEAASKTFVL LEPKGTYLRG GYGCYEREAD GSVEEPKERG DGWSEVKLGN FYNGDGGCDD DGDEIEFSIM EIQKGNLKSG LILQGIEIRP
301: MIEGEEEMVI AKLANISLR
Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.