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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02230.1 CDX68112 AT1G75950.1 12795696
AT2G02230.1 CDX73212 AT1G75950.1 12795696
AT2G02230.1 CDX80590 AT1G75950.1 12795696
AT2G02230.1 CDX85931 AT1G75950.1 12795696
AT2G02230.1 CDX87650 AT1G75950.1 12795696
AT2G02230.1 CDY13521 AT1G75950.1 12795696
AT2G02230.1 CDY39073 AT1G75950.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024824.1-P Field mustard cytosol 90.69 89.61
CDY17601 Canola cytosol 76.28 86.1
CDY03062 Canola cytosol 74.47 77.74
CDY17605 Canola cytosol 66.07 74.83
CDY17602 Canola cytosol 69.37 74.04
CDY03060 Canola cytosol 70.27 72.67
CDY09383 Canola cytosol 63.36 69.41
CDY15823 Canola cytosol 66.07 66.27
CDY62670 Canola cytosol 5.71 65.52
AT2G02230.1 Thale cress cytosol 59.46 58.93
CDY03058 Canola cytosol 42.64 49.65
CDY09382 Canola cytosol 39.64 49.62
CDY70803 Canola cytosol 39.34 49.25
CDY17600 Canola cytosol 42.04 48.95
CDY03057 Canola cytosol 34.83 48.95
CDY17599 Canola cytosol 41.44 48.76
CDY09378 Canola cytosol 39.04 48.15
CDY09379 Canola cytosol 35.14 47.18
CDY09375 Canola cytosol 40.54 46.23
CDY63170 Canola cytosol 34.23 45.78
CDY65051 Canola cytosol 30.63 45.13
VIT_00s0214g00130.t01 Wine grape cytosol 36.34 43.68
CDY09380 Canola cytosol 41.44 43.53
CDY68805 Canola cytosol 22.52 43.35
Solyc04g050990.2.1 Tomato cytosol 37.84 42.42
PGSC0003DMT400031292 Potato cytosol 37.24 41.75
CDY09376 Canola cytosol 24.02 41.24
CDY03056 Canola cytosol 18.92 40.13
Solyc05g055870.2.1 Tomato cytosol 36.64 39.61
CDX88110 Canola cytosol 14.41 39.34
CDY24793 Canola cytosol 17.12 39.31
VIT_00s0214g00060.t01 Wine grape cytosol 33.63 39.02
KRG92586 Soybean cytosol, plastid 35.44 38.94
VIT_00s0214g00150.t01 Wine grape cytosol 35.74 38.89
PGSC0003DMT400060018 Potato cytosol 36.34 38.66
CDX87293 Canola cytosol 29.43 38.28
CDY39994 Canola cytosol 29.43 38.28
KRH68844 Soybean cytosol 36.34 38.17
CDY72024 Canola plastid 29.13 35.66
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 37.24 35.53
VIT_00s0214g00090.t01 Wine grape cytosol 35.74 35.31
CDX95006 Canola cytosol 29.43 35.25
CDY71953 Canola cytosol 28.83 34.53
CDY31110 Canola plastid 27.93 34.44
CDY38992 Canola cytosol 27.93 32.86
CDY54100 Canola cytosol 27.63 32.51
CDY65052 Canola cytosol 40.84 31.48
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 19.82 30.56
CDY38901 Canola cytosol 20.72 24.82
CDY32595 Canola cytosol 21.32 24.57
CDY63226 Canola plastid 21.32 24.48
CDY45973 Canola cytosol 21.32 24.48
CDY57080 Canola cytosol 19.82 23.4
CDY49201 Canola cytosol 20.12 23.1
CDX73584 Canola cytosol 20.12 23.1
CDX98047 Canola cytosol 19.82 23.0
CDX78140 Canola cytosol 20.72 22.92
CDY47354 Canola cytosol 19.82 22.76
CDY42484 Canola cytosol 18.92 22.11
CDX89095 Canola cytosol 18.92 22.03
CDY16361 Canola extracellular 12.61 21.88
CDX79690 Canola cytosol 19.22 21.77
CDX84551 Canola cytosol 18.92 21.43
CDX95004 Canola peroxisome, plasma membrane, vacuole 18.92 19.5
Protein Annotations
EnsemblPlants:CDY03059EnsemblPlantsGene:GSBRNA2T00115393001Gene3D:1.20.1280.50GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:F-box-like_dom_sfInterPro:F-box_domInterPro:IPR001810InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF6
PFAM:PF00646PFAM:PF14299PFscan:PS50181ProteinID:CDY03059ProteinID:CDY03059.1SEG:seg
SUPFAM:SSF81383UniParc:UPI0004EED1A8MapMan:35.1:::
Description
BnaC07g21680D
Coordinates
chrLK031939:+:677272..678605
Molecular Weight (calculated)
37550.4 Da
IEP (calculated)
5.601
GRAVY (calculated)
-0.532
Length
333 amino acids
Sequence
(BLAST)
001: MEQSELGDSS SRNDEIVSIG APARFDTLPE DCISMVIYRT SPRDACVVAS VSKTVKSAAE SDLVWEKFLP QDYSSLVPPR SVDFSSKKEM YMSLADDSVL
101: IDDGKKSFWL EKGSGKKCYM LSAMDLNILW INRPLYWKWN TDPESKFEKV AELRHVCWFK IQGKISCGML SKGTHYFVYL VFKRTSGGSV GFEDTPMEAQ
201: VGFVGKESSK SFVLLEPGRR GYRYSCVSRR PVYSEFRTRR PRAGVRGERA TDGHVEEPKE RGDGWSEVKL GNTYISDGGC DDDGDEIEFA IMEIRNSEKG
301: QRKSGLIFQG IEIRPMKEGE EMVIAKSSNS DNI
Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.