Factsheet for Bra024824.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G02230.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G02230.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY03059	Canola	cytosol	89.61	90.69
CDY17601	Canola	cytosol	78.64	89.83
Bra024827.1-P	Field mustard	cytosol	69.73	74.84
Bra024825.1-P	Field mustard	cytosol	59.94	70.38
Bra026609.1-P	Field mustard	cytosol	64.69	65.27
AT2G02230.1	Thale cress	cytosol	59.35	59.52
Bra024822.1-P	Field mustard	cytosol	32.34	50.0
Bra024823.1-P	Field mustard	cytosol	40.95	48.25
Bra026608.1-P	Field mustard	cytosol	39.17	47.48
Bra026603.1-P	Field mustard	cytosol	40.65	47.08
VIT_00s0214g00130.t01	Wine grape	cytosol	35.01	42.6
Solyc04g050990.2.1	Tomato	cytosol	37.39	42.42
Bra026605.1-P	Field mustard	cytosol	32.64	42.15
Bra026604.1-P	Field mustard	cytosol	40.06	41.93
PGSC0003DMT400031292	Potato	cytosol	36.8	41.75
Solyc05g055870.2.1	Tomato	cytosol	36.5	39.94
KRG92586	Soybean	cytosol, plastid	35.31	39.27
VIT_00s0214g00150.t01	Wine grape	cytosol	35.61	39.22
Bra035198.1-P	Field mustard	cytosol	29.67	39.06
PGSC0003DMT400060018	Potato	cytosol	36.2	38.98
Bra026606.1-P	Field mustard	plasma membrane, vacuole	40.06	38.68
KRH68844	Soybean	cytosol	36.2	38.49
VIT_00s0214g00060.t01	Wine grape	cytosol	31.75	37.28
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	36.5	35.24
Bra018579.1-P	Field mustard	cytosol	28.78	34.89
VIT_00s0214g00090.t01	Wine grape	cytosol	34.42	34.42
Bra030758.1-P	Field mustard	cytosol	27.0	33.46
Bra038174.1-P	Field mustard	cytosol	27.6	32.86
Bra029137.1-P	Field mustard	cytosol	21.66	25.17
Bra027000.1-P	Field mustard	cytosol	21.66	25.17
Bra006966.1-P	Field mustard	cytosol	21.66	24.25
Bra019781.1-P	Field mustard	cytosol	20.47	24.04
Bra027618.1-P	Field mustard	cytosol	20.47	23.79
Bra014456.1-P	Field mustard	cytosol	18.99	22.38
Bra023077.1-P	Field mustard	cytosol	18.69	21.43

Protein Annotations

EnsemblPlants:Bra024824.1	EnsemblPlants:Bra024824.1-P	EnsemblPlantsGene:Bra024824	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278
PANTHER:PTHR32278:SF6	PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI000253F8D3	UniProt:M4E7R8	MapMan:35.1	:	:

Description

AT2G02230 (E=7e-071) AtPP2-B1 | AtPP2-B1 (Phloem protein 2-B1); carbohydrate binding

Coordinates

chrA06:+:23642074..23643257

Molecular Weight (calculated)

38082.1 Da

IEP (calculated)

5.240

GRAVY (calculated)

-0.503

Length

337 amino acids

Sequence
(BLAST)

001: MEQSELGDSH SCGGCSRNDE IISVEAPARL DTLPEDCISM VVSYTSPRDA CVVASVSKTV KSAAESDLVW EKFLPQDYSS LVPRSVDFLC KKEIYMSLAN
101: DSVLIDDGKK SIWLEKGSGK KCYMLSAMDL NIAWIDRPLY WKWNTDPESK FEKVAELRHV CCFRIRGKIS CGMLSKGTHY LVYLVFKRTS GGSVGFEETP
201: MEAQVGFVGK ESSKSFVLLE PSRRGYRYSC VWRRPVYREF RTGRPREGVR GERETDGHVE EPKERGDGWS EVKLGNFYIS DGGCDDDGDE IEFAIMEPRN
301: SEVGQRKSGL IFQGIEIRPM KEREEMVIAK SSNSDNI

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.