Factsheet for Bra006966.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78140	Canola	cytosol	99.67	99.67
AT3G53000.1	Thale cress	cytosol	84.39	84.67
Bra023077.1-P	Field mustard	cytosol	73.09	74.83
VIT_08s0007g04190.t01	Wine grape	cytosol	72.43	72.91
KRH67813	Soybean	cytosol	68.44	69.83
KRH20009	Soybean	cytosol, plastid	69.1	69.8
KRH32630	Soybean	cytosol, plastid	68.77	69.0
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	65.78	66.89
PGSC0003DMT400028899	Potato	cytosol	64.12	65.65
PGSC0003DMT400006947	Potato	cytosol	64.78	65.22
PGSC0003DMT400072413	Potato	cytosol	63.12	65.07
Solyc09g008820.2.1	Tomato	cytosol	63.46	63.88
Solyc10g085490.1.1	Tomato	cytosol	63.12	63.55
Solyc10g083730.1.1	Tomato	cytosol	63.12	63.55
Bra019781.1-P	Field mustard	cytosol	50.5	52.96
Bra014456.1-P	Field mustard	cytosol	49.17	51.75
Bra027618.1-P	Field mustard	cytosol	47.18	48.97
Bra027000.1-P	Field mustard	cytosol	46.84	48.62
Bra029137.1-P	Field mustard	cytosol	44.52	46.21
Bra024822.1-P	Field mustard	cytosol	21.26	29.36
Bra026608.1-P	Field mustard	cytosol	24.58	26.62
Bra024823.1-P	Field mustard	cytosol	24.92	26.22
Bra035198.1-P	Field mustard	cytosol	22.26	26.17
Bra018579.1-P	Field mustard	cytosol	23.92	25.9
Bra030758.1-P	Field mustard	cytosol	23.26	25.74
Bra026604.1-P	Field mustard	cytosol	26.25	24.53
Bra038174.1-P	Field mustard	cytosol	22.92	24.38
Bra024827.1-P	Field mustard	cytosol	25.25	24.2
Bra026609.1-P	Field mustard	cytosol	25.25	22.75
Bra026603.1-P	Field mustard	cytosol	21.93	22.68
Bra024825.1-P	Field mustard	cytosol	21.59	22.65
Bra026605.1-P	Field mustard	cytosol	18.94	21.84
Bra024824.1-P	Field mustard	cytosol	24.25	21.66
Bra026606.1-P	Field mustard	plasma membrane, vacuole	24.58	21.2

Protein Annotations

EnsemblPlants:Bra006966.1	EnsemblPlants:Bra006966.1-P	EnsemblPlantsGene:Bra006966	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960	PANTHER:PTHR31960:SF7
PFAM:PF14299	PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI0002542EB5	UniProt:M4CRX4	MapMan:19.2.2.8.1.4.6

Description

AT3G53000 (E=2e-154) AtPP2-A15 | AtPP2-A15 (Phloem protein 2-A15); carbohydrate binding

Coordinates

chrA09:+:26568256..26569393

Molecular Weight (calculated)

33973.2 Da

IEP (calculated)

6.237

GRAVY (calculated)

-0.340

Length

301 amino acids

Sequence
(BLAST)

001: MGSSLSNLND GATNDSSTGP SLGDIPESCI AAVFMYLTPP EICNLAGLNR SFRGAASSDF VWEKKLPPNY QDLLDLLPPE RVLGLSKKDI FAVLSRPIPF
101: DDDNKELWID RVTGRVCMAV SARGMAITGI EDRRYWNWIP TNESRFHVVA YLQQIWWFEV DGTVTFHLPP GIYSLSFRIH LGGFGKKSGR RVCNYEHTHG
201: WDLKPVRFSL STSDGQEASC EYYLDDVKRE EAHGHHKRGF WIDYKVGEFV VTGSEPSTEI KWSMKQIDCT HSKGGLCVDS VFINPIGDLK DYRTKSFCEI
301: S

Best Arabidopsis Sequence Match ( AT3G53000.1 )
(BLAST)

001: MGSSLSNLND GTNGLAMGPG LGDIPESCVA CVFMYLTPPE ICNLAGLNRS FRGAASSDSV WEKKLPENYQ DLLDLLPPER YHSLSKKDIF AVLSRPIPFD
101: DDNKEVWIDR VTGRVCMAIS ARGMSITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GTVRFHLPPG VYSLSFRIHL GRFTKRLGRR VCHFELTHGW
201: DLKPVRFSLS TSDGQEASCE YYLDDVERNE ALGKHKRGYW IEYRVGEFIV NGSEPSTEIQ WSMKQIDCTH SKGGLCVDSV FINPIGDVKE HKRKAVLKEA

Arabidopsis Description

PP2A15F-box protein PP2-A15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.