Factsheet for VIT_08s0007g04190.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH32630	Soybean	cytosol, plastid	81.94	81.67
KRH20009	Soybean	cytosol, plastid	81.27	81.54
KRH67813	Soybean	cytosol	80.27	81.36
AT3G53000.1	Thale cress	cytosol	77.59	77.33
CDX79690	Canola	cytosol	75.25	76.53
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	74.92	75.68
CDX84551	Canola	cytosol	73.91	75.17
Bra023077.1-P	Field mustard	cytosol	73.58	74.83
PGSC0003DMT400006947	Potato	cytosol	73.91	73.91
CDX73584	Canola	cytosol	71.24	73.45
PGSC0003DMT400072413	Potato	cytosol	70.9	72.6
Bra006966.1-P	Field mustard	cytosol	72.91	72.43
Solyc09g008820.2.1	Tomato	cytosol	72.24	72.24
PGSC0003DMT400028899	Potato	cytosol	70.9	72.11
CDX78140	Canola	cytosol	72.58	72.09
Solyc10g083730.1.1	Tomato	cytosol	70.9	70.9
Solyc10g085490.1.1	Tomato	cytosol	69.57	69.57
VIT_16s0100g00520.t01	Wine grape	cytosol	53.51	57.35
VIT_15s0048g01930.t01	Wine grape	cytosol	54.52	56.4
VIT_02s0025g04380.t01	Wine grape	cytosol	56.52	54.69
VIT_14s0060g01990.t01	Wine grape	cytosol	23.75	25.63
VIT_00s0214g00060.t01	Wine grape	cytosol	24.08	25.09
VIT_14s0060g02020.t01	Wine grape	cytosol	23.75	24.91
VIT_14s0060g02000.t01	Wine grape	cytosol	23.75	24.65
VIT_05s0051g00080.t01	Wine grape	cytosol	20.4	23.11
VIT_00s0214g00130.t01	Wine grape	cytosol	21.4	23.1
VIT_00s0214g00150.t01	Wine grape	cytosol	22.41	21.9
VIT_00s0214g00160.t01	Wine grape	cytosol	22.07	21.09
VIT_00s0214g00090.t01	Wine grape	cytosol	23.08	20.47
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	23.41	20.06

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100256186	wikigene:100256186	MapMan:19.2.2.8.1.4.6	UniProt:A5BT80	EMBL:AM470248
ProteinID:CAN81450	ProteinID:CAN81450.1	ProteinID:CBI30219	ProteinID:CBI30219.3	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
EMBL:FN595991	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100256186
wikigene:LOC100256186	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR31960	PANTHER:PTHR31960:SF7
SUPFAM:SSF81383	TIGR:TC63383	UniParc:UPI00015247D2	ArrayExpress:VIT_08s0007g04190	EnsemblPlantsGene:VIT_08s0007g04190	EnsemblPlants:VIT_08s0007g04190.t01
RefSeq:XP_002283923	RefSeq:XP_002283923.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr8:+:18178399..18183079

Molecular Weight (calculated)

33923.4 Da

IEP (calculated)

7.418

GRAVY (calculated)

-0.355

Length

299 amino acids

Sequence
(BLAST)

001: MGAALSNLTE GANGSTIGPG LGDIPESCVA CVFLYLTPPE ICNLARLNRA FRGAASSDSV WESKLPSNYQ DLLDLLPPER YHNLSKKDIF ALLSRPVPFD
101: NGNKEVWLDR DTGRICMAIS AKGMVITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GVVKFHFPAD VYTLSFRLQL GRFSKRLGRR VPNFEHTHGW
201: DIKPVRFQLS TSDGQQASFE CCLDETERED ANGNHKRGCW IDYKVGEFIV TDSEPATEVR FSMKQIDCTH SKGGICVDSV FIIPSDLRGR KRRGVLKKP

Best Arabidopsis Sequence Match ( AT3G53000.1 )
(BLAST)

001: MGSSLSNLND GTNGLAMGPG LGDIPESCVA CVFMYLTPPE ICNLAGLNRS FRGAASSDSV WEKKLPENYQ DLLDLLPPER YHSLSKKDIF AVLSRPIPFD
101: DDNKEVWIDR VTGRVCMAIS ARGMSITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GTVRFHLPPG VYSLSFRIHL GRFTKRLGRR VCHFELTHGW
201: DLKPVRFSLS TSDGQEASCE YYLDDVERNE ALGKHKRGYW IEYRVGEFIV NGSEPSTEIQ WSMKQIDCTH SKGGLCVDSV FINPIGDVKE HKRKAVLKEA

Arabidopsis Description

PP2A15F-box protein PP2-A15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.