Factsheet for VIT_00s0214g00040.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT2G02300.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT2G02300.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G02360.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0214g00090.t01	Wine grape	cytosol	62.75	64.99
VIT_00s0214g00130.t01	Wine grape	cytosol	49.86	62.82
VIT_00s0214g00060.t01	Wine grape	cytosol	50.43	61.32
VIT_00s0214g00150.t01	Wine grape	cytosol	51.86	59.15
PGSC0003DMT400031292	Potato	cytosol	44.99	52.86
Solyc04g050990.2.1	Tomato	cytosol	44.99	52.86
Solyc05g055870.2.1	Tomato	cytosol	45.27	51.3
PGSC0003DMT400060018	Potato	cytosol	45.56	50.8
VIT_00s0214g00160.t01	Wine grape	cytosol	44.7	49.84
KRG92586	Soybean	cytosol, plastid	43.27	49.84
CDY03056	Canola	cytosol	22.06	49.04
AT2G02360.1	Thale cress	nucleus	37.82	48.53
Bra024822.1-P	Field mustard	cytosol	30.09	48.17
CDY17599	Canola	cytosol	38.68	47.7
AT5G24560.1	Thale cress	cytosol	26.07	46.67
VIT_14s0060g02020.t01	Wine grape	cytosol	38.11	46.67
CDY03057	Canola	cytosol	31.52	46.41
CDY09378	Canola	cytosol	35.82	46.3
VIT_14s0060g02000.t01	Wine grape	cytosol	38.11	46.18
CDY65051	Canola	cytosol	29.8	46.02
CDY63170	Canola	cytosol	32.66	45.78
KRH68844	Soybean	cytosol	41.26	45.43
VIT_14s0060g01990.t01	Wine grape	cytosol	35.24	44.4
CDY24793	Canola	cytosol	18.34	44.14
CDY17600	Canola	cytosol	36.1	44.06
Bra024823.1-P	Field mustard	cytosol	35.82	43.71
CDY03058	Canola	cytosol	35.53	43.36
CDY70803	Canola	cytosol	32.95	43.23
CDY09382	Canola	cytosol	32.95	43.23
CDY09376	Canola	cytosol	23.78	42.78
CDY09379	Canola	cytosol	30.37	42.74
CDX88110	Canola	cytosol	14.9	42.62
Bra026604.1-P	Field mustard	cytosol	38.4	41.61
Bra026608.1-P	Field mustard	cytosol	32.95	41.37
CDY09383	Canola	cytosol	35.82	41.12
Bra024825.1-P	Field mustard	cytosol	33.24	40.42
CDY17601	Canola	cytosol	34.1	40.34
AT2G02250.1	Thale cress	cytosol	35.53	40.0
CDY68805	Canola	cytosol	19.77	39.88
Bra026603.1-P	Field mustard	cytosol	33.24	39.86
CDY17605	Canola	cytosol	33.52	39.8
CDY17602	Canola	cytosol	35.53	39.74
AT2G02240.1	Thale cress	cytosol	36.39	39.69
AT2G02230.1	Thale cress	cytosol	38.11	39.58
AT2G02350.2	Thale cress	cytosol, mitochondrion	33.24	39.46
CDY09375	Canola	cytosol	32.95	39.38
CDY03062	Canola	cytosol	35.82	39.19
VIT_05s0051g00080.t01	Wine grape	cytosol	29.23	38.64
Bra024827.1-P	Field mustard	cytosol	34.67	38.53
AT2G02340.1	Thale cress	cytosol	33.52	38.36
CDY15823	Canola	cytosol	36.1	37.95
CDY09380	Canola	cytosol	34.38	37.85
Bra026609.1-P	Field mustard	cytosol	36.1	37.72
CDY03060	Canola	cytosol	34.67	37.58
CDY03059	Canola	cytosol	35.53	37.24
Bra026605.1-P	Field mustard	cytosol	27.51	36.78
AT2G02300.1	Thale cress	cytosol	29.8	36.62
Bra024824.1-P	Field mustard	cytosol	35.24	36.5
AT2G02310.1	Thale cress	cytosol	31.52	35.83
AT2G02320.1	Thale cress	mitochondrion	30.37	34.53
Bra026606.1-P	Field mustard	plasma membrane, vacuole	33.81	33.81
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	19.48	31.48
CDY65052	Canola	cytosol	33.52	27.08
VIT_15s0048g01930.t01	Wine grape	cytosol	21.49	25.95
VIT_16s0100g00520.t01	Wine grape	cytosol	20.34	25.45
VIT_08s0007g04190.t01	Wine grape	cytosol	20.06	23.41
VIT_02s0025g04380.t01	Wine grape	cytosol	20.63	23.3

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100266101	wikigene:100266101	MapMan:35.1	ProteinID:CCB60971	ProteinID:CCB60971.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I204	EMBL:FN596523	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100266101	wikigene:LOC100266101	PFAM:PF14299	InterPro:PP2-like
PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	SUPFAM:SSF81383	UniParc:UPI00015CD985	ArrayExpress:VIT_00s0214g00040
EnsemblPlantsGene:VIT_00s0214g00040	EnsemblPlants:VIT_00s0214g00040.t01	RefSeq:XP_002270048	RefSeq:XP_002270048.1	SEG:seg	:

Description

No Description!

Coordinates

chrUn:+:13320308..13321444

Molecular Weight (calculated)

39713.7 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.395

Length

349 amino acids

Sequence
(BLAST)

001: MGRKNVAGNS AKHSAAGHGF SSLPEGCIAD VLALTSPRDV CRMSAVASVF LSAAESDALW ERFLPADYRE IIARSSESSS WRHFSSKKEL YFTLCDYPLL
101: IDEGKKSFWL EKRSGKKCYM LASRELTIIW GDTPGYWEWT SLPESRFPEV AYLQAVCWFE IRGKINTCML SPRTNYAAYL VFHAGRSHGF EDVPVESSIE
201: IVGNETTTRV IYLARYRSEE QAEHDDLEYE CVSIEDVRSW INDNLTQLYS SQEPGKALLG LEDVKTWMNS NVMKLFSSQE NEEPTSSIRS DLPYPKKRED
301: SWFEIELGEF FIEGGEDTEL EITLMEVKAG HWKDGLIVEG IEIRPKGDL

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.