Factsheet for Bra026605.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
extracellular 2
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017974.1-P
Bra018126.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02300.1	Bra018126.1-P	AT3G47620.1	21798944
AT2G02300.1	Bra017974.1-P	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09379	Canola	cytosol	78.93	83.06
CDY65051	Canola	cytosol	62.07	71.68
Bra024823.1-P	Field mustard	cytosol	52.87	48.25
AT2G02310.1	Thale cress	cytosol	55.94	47.56
Bra026608.1-P	Field mustard	cytosol	50.19	47.12
Bra024822.1-P	Field mustard	cytosol	37.93	45.41
AT2G02300.1	Thale cress	cytosol	47.89	44.01
Bra026603.1-P	Field mustard	cytosol	48.28	43.3
Bra026604.1-P	Field mustard	cytosol	52.49	42.55
Bra026606.1-P	Field mustard	plasma membrane, vacuole	48.66	36.39
Bra024827.1-P	Field mustard	cytosol	41.76	34.71
Bra024825.1-P	Field mustard	cytosol	37.93	34.49
VIT_00s0214g00130.t01	Wine grape	cytosol	36.4	34.3
Bra024824.1-P	Field mustard	cytosol	42.15	32.64
Bra026609.1-P	Field mustard	cytosol	41.0	32.04
KRG92586	Soybean	cytosol, plastid	36.78	31.68
Solyc04g050990.2.1	Tomato	cytosol	34.87	30.64
PGSC0003DMT400031292	Potato	cytosol	33.72	29.63
VIT_00s0214g00060.t01	Wine grape	cytosol	31.8	28.92
Bra035198.1-P	Field mustard	cytosol	28.35	28.91
Solyc05g055870.2.1	Tomato	cytosol	34.1	28.9
PGSC0003DMT400060018	Potato	cytosol	34.48	28.75
KRH68844	Soybean	cytosol	34.87	28.71
VIT_00s0214g00150.t01	Wine grape	cytosol	33.33	28.43
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	36.78	27.51
Bra030758.1-P	Field mustard	cytosol	28.35	27.21
Bra018579.1-P	Field mustard	cytosol	28.74	26.98
Bra038174.1-P	Field mustard	cytosol	28.35	26.15
VIT_00s0214g00090.t01	Wine grape	cytosol	32.95	25.52
Bra014456.1-P	Field mustard	cytosol	22.99	20.98
Bra027000.1-P	Field mustard	cytosol	22.61	20.34
Bra029137.1-P	Field mustard	cytosol	22.22	20.0
Bra019781.1-P	Field mustard	cytosol	21.07	19.16
Bra006966.1-P	Field mustard	cytosol	21.84	18.94
Bra027618.1-P	Field mustard	cytosol	20.69	18.62
Bra023077.1-P	Field mustard	cytosol	19.16	17.01

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EnsemblPlantsGene:Bra026605	EnsemblPlants:Bra026605.1	EnsemblPlants:Bra026605.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	UniProt:M4ECU5
PFAM:PF00646	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00025468C6	:	:	:

Description

AT2G02310 (E=3e-042) AtPP2-B6 | AtPP2-B6 (Phloem protein 2-B6); carbohydrate binding

Coordinates

chrA02:+:20595288..20596321

Molecular Weight (calculated)

29705.0 Da

IEP (calculated)

7.655

GRAVY (calculated)

-0.167

Length

261 amino acids

Sequence
(BLAST)

001: MGQKLDFGSG GKIGQERVSV SSPFDNLPDD CIANIISLTS PRDACIAASV SKTFKSTSEF NSVWEKFLPP EYSSLILGSQ VFTLKKELYL ALCNDPVLIE
101: DGQKACMVTI SIMMMVNNVE RFKKVPELLD VCAFEIRGWM NTRVLSPRTH YSAYVVYKTR TGCHGFRDLP IQVGIGFVGE KSTKRFICFD ESTDRIKLWG
201: RRELKKSKER QDGWIEAEIG DLFNEFGCEK IELSIIDITS PYWKRGLIIQ GIEFRPVEKL W

Best Arabidopsis Sequence Match ( AT2G02310.1 )
(BLAST)

001: MGQKLGVDSR QKIRQVLGSS SKVQKHDVES IGGGGGEIVP GHSPFDDLPE DCISNIISFT SPRDVCVSAS VSKSFAHAVQ CDSIWEKFLP SEYESLIPPW
101: RVFSSKKDLY FTLCYDPVLV EDGKKSFWLE TASGKKCVLL AAKELWITGG NNPEYWQWIE LCESSFEKVP ELLNNRSFQM GGSMSTQILS LGTHYSVYIV
201: YKIKDERHGL RDLPIQVGVG FKGQEMPKQF ICFDESTDKT KEWPKKKLMK SKKRGDGWME AEIGDFFNDG GLMGFDEVEV SIVDVTSPNL KCGVMIEGIE
301: FRPKDCQ

Arabidopsis Description

PP2B6Putative F-box protein PP2-B6 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.