Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Bra003735.1-P | |
Bra008231.1-P | |
Bra015801.1-P |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT2G02360.1 | Bra003735.1-P | AT1G75950.1 | 21798944 |
AT2G02360.1 | Bra008231.1-P | AT1G75950.1 | 21798944 |
AT2G02360.1 | Bra015801.1-P | AT1G75950.1 | 21798944 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY17599 | Canola | cytosol | 95.87 | 73.85 |
AT2G02360.1 | Thale cress | nucleus | 68.35 | 54.78 |
Bra024823.1-P | Field mustard | cytosol | 62.84 | 47.9 |
Bra026608.1-P | Field mustard | cytosol | 58.26 | 45.68 |
Bra026603.1-P | Field mustard | cytosol | 59.17 | 44.33 |
AT2G02340.1 | Thale cress | cytosol | 61.01 | 43.61 |
AT2G02350.2 | Thale cress | cytosol, mitochondrion | 58.26 | 43.2 |
Bra026604.1-P | Field mustard | cytosol | 58.26 | 39.44 |
AT2G02320.1 | Thale cress | mitochondrion | 55.5 | 39.41 |
Bra024825.1-P | Field mustard | cytosol | 50.92 | 38.68 |
Bra026605.1-P | Field mustard | cytosol | 45.41 | 37.93 |
Bra026606.1-P | Field mustard | plasma membrane, vacuole | 58.26 | 36.39 |
VIT_00s0214g00130.t01 | Wine grape | cytosol | 45.41 | 35.74 |
Bra024827.1-P | Field mustard | cytosol | 50.92 | 35.35 |
Bra026609.1-P | Field mustard | cytosol | 52.29 | 34.13 |
VIT_00s0214g00060.t01 | Wine grape | cytosol | 43.58 | 33.1 |
Solyc04g050990.2.1 | Tomato | cytosol | 44.95 | 33.0 |
Bra024824.1-P | Field mustard | cytosol | 50.0 | 32.34 |
PGSC0003DMT400031292 | Potato | cytosol | 44.04 | 32.32 |
KRG92586 | Soybean | cytosol, plastid | 44.5 | 32.01 |
Solyc05g055870.2.1 | Tomato | cytosol | 44.95 | 31.82 |
PGSC0003DMT400060018 | Potato | cytosol | 45.41 | 31.63 |
Bra035198.1-P | Field mustard | cytosol | 36.24 | 30.86 |
VIT_00s0214g00150.t01 | Wine grape | cytosol | 42.66 | 30.39 |
KRH68844 | Soybean | cytosol | 44.04 | 30.28 |
VIT_00s0214g00040.t01 | Wine grape | cytosol, plastid | 48.17 | 30.09 |
VIT_00s0214g00090.t01 | Wine grape | cytosol | 45.87 | 29.67 |
Bra018579.1-P | Field mustard | cytosol | 36.24 | 28.42 |
Bra030758.1-P | Field mustard | cytosol | 35.32 | 28.31 |
Bra038174.1-P | Field mustard | cytosol | 35.78 | 27.56 |
Bra019781.1-P | Field mustard | cytosol | 30.73 | 23.34 |
Bra029137.1-P | Field mustard | cytosol | 29.36 | 22.07 |
Bra006966.1-P | Field mustard | cytosol | 29.36 | 21.26 |
Bra014456.1-P | Field mustard | cytosol | 27.52 | 20.98 |
Bra027000.1-P | Field mustard | cytosol | 27.52 | 20.69 |
Bra027618.1-P | Field mustard | cytosol | 26.61 | 20.0 |
Bra023077.1-P | Field mustard | cytosol | 26.61 | 19.73 |
Protein Annotations
Gene3D:1.20.1280.50 | MapMan:35.1 | EnsemblPlantsGene:Bra024822 | EnsemblPlants:Bra024822.1 | EnsemblPlants:Bra024822.1-P | InterPro:F-box-like_dom_sf |
InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:M4E7R6 |
PFAM:PF00646 | PFAM:PF14299 | InterPro:PP2-like | PFscan:PS50181 | PANTHER:PTHR32278 | PANTHER:PTHR32278:SF6 |
SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000253F8D1 | : | : | : |
Description
AT2G02360 (E=1e-087) AtPP2-B10 | AtPP2-B10 (Phloem protein 2-B10); carbohydrate binding
Coordinates
chrA06:+:23635427..23636250
Molecular Weight (calculated)
24458.8 Da
IEP (calculated)
4.864
GRAVY (calculated)
-0.244
Length
218 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNHGVESS GEGRGKIGSA SSPFDSFPED CISKIVSFTS PRDTCVAATV SKAFESAVNS DVAWEKFLPP EYESLVPRSR DFSSKKDMYF ALCDEPVLID
101: DGTKSFWLEK ASGKRCIMLS AMNISIIWGD TPQYWEWITI PEARFKRVAE LLNVCWFEIR GRVNTRVLSP RTRYSAYLVF KKADHCYGFD DVAIEAGVGV
201: VGHEASTRTI CFEMDDDD
101: DGTKSFWLEK ASGKRCIMLS AMNISIIWGD TPQYWEWITI PEARFKRVAE LLNVCWFEIR GRVNTRVLSP RTRYSAYLVF KKADHCYGFD DVAIEAGVGV
201: VGHEASTRTI CFEMDDDD
001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
Arabidopsis Description
PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.