Factsheet for Bra024825.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G02230.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G02230.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17602	Canola	cytosol	95.82	88.14
Bra024827.1-P	Field mustard	cytosol	71.08	64.97
Bra026609.1-P	Field mustard	cytosol	71.78	61.68
Bra024824.1-P	Field mustard	cytosol	70.38	59.94
AT2G02230.1	Thale cress	cytosol	64.46	55.06
Bra024822.1-P	Field mustard	cytosol	38.68	50.92
Bra024823.1-P	Field mustard	cytosol	46.34	46.5
Bra026608.1-P	Field mustard	cytosol	44.25	45.68
Bra026603.1-P	Field mustard	cytosol	45.3	44.67
Solyc04g050990.2.1	Tomato	cytosol	41.81	40.4
PGSC0003DMT400031292	Potato	cytosol	41.12	39.73
VIT_00s0214g00130.t01	Wine grape	cytosol	38.33	39.71
VIT_00s0214g00150.t01	Wine grape	cytosol	41.12	38.56
Bra026604.1-P	Field mustard	cytosol	42.86	38.2
Bra026605.1-P	Field mustard	cytosol	34.49	37.93
Bra035198.1-P	Field mustard	cytosol	33.8	37.89
Solyc05g055870.2.1	Tomato	cytosol	40.07	37.34
PGSC0003DMT400060018	Potato	cytosol	40.42	37.06
KRG92586	Soybean	cytosol, plastid	39.02	36.96
Bra026606.1-P	Field mustard	plasma membrane, vacuole	43.55	35.82
VIT_00s0214g00060.t01	Wine grape	cytosol	35.19	35.19
KRH68844	Soybean	cytosol	38.68	35.02
Bra030758.1-P	Field mustard	cytosol	32.4	34.19
VIT_00s0214g00090.t01	Wine grape	cytosol	39.72	33.83
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	40.42	33.24
Bra018579.1-P	Field mustard	cytosol	31.71	32.73
Bra038174.1-P	Field mustard	cytosol	31.71	32.16
Bra029137.1-P	Field mustard	cytosol	23.0	22.76
Bra006966.1-P	Field mustard	cytosol	22.65	21.59
Bra027000.1-P	Field mustard	cytosol	21.25	21.03
Bra019781.1-P	Field mustard	cytosol	20.56	20.56
Bra023077.1-P	Field mustard	cytosol	20.56	20.07
Bra027618.1-P	Field mustard	cytosol	19.86	19.66
Bra014456.1-P	Field mustard	cytosol	19.51	19.58

Protein Annotations

EnsemblPlants:Bra024825.1	EnsemblPlants:Bra024825.1-P	EnsemblPlantsGene:Bra024825	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	PFAM:PF14299	SEG:seg
SUPFAM:SSF81383	UniParc:UPI000253F8D4	UniProt:M4E7R9	MapMan:35.1	:	:

Description

AT2G02230 (E=8e-070) AtPP2-B1 | AtPP2-B1 (Phloem protein 2-B1); carbohydrate binding

Coordinates

chrA06:+:23646552..23647604

Molecular Weight (calculated)

32638.8 Da

IEP (calculated)

5.316

GRAVY (calculated)

-0.452

Length

287 amino acids

Sequence
(BLAST)

001: MVIYHTSPRD ACVAASVSKT VKSAAESDLV WERFLPPEYS SLVPPRSLDF SSKKEIYLSL ADDSVLIDDG KKSFWLEKAS GKRCYMLSAM DLKITWSDCP
101: AYWQWNTVPD SKFKRVAELR DVCWFEIRGK ISCGMLSKGT HYSVYLVFKR AGGRSYGFED TPMEAQVGFV GKDAAKKKFV VLEPIDMDQP SGYRYTSVSL
201: TWVSREDRTR RLREVGGNVE EPKVRGDGWS EVKLGKVYIH DGGYDDDGDE IEFSIMETEQ GDWKSAMIFQ GVEIRPMKEG EEMVITK

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.