Factsheet for Bra024827.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	Bra003735.1-P	AT1G75950.1	12795696
AT2G02230.1	Bra008231.1-P	AT1G75950.1	12795696
AT2G02230.1	Bra015801.1-P	AT1G75950.1	12795696

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY17605	Canola	cytosol	88.53	94.56
Bra024825.1-P	Field mustard	cytosol	64.97	71.08
Bra024824.1-P	Field mustard	cytosol	74.84	69.73
Bra026609.1-P	Field mustard	cytosol	69.75	65.57
AT2G02230.1	Thale cress	cytosol	62.74	58.63
Bra024823.1-P	Field mustard	cytosol	46.5	51.05
Bra024822.1-P	Field mustard	cytosol	35.35	50.92
Bra026608.1-P	Field mustard	cytosol	43.95	49.64
Bra026603.1-P	Field mustard	cytosol	43.63	47.08
Bra026604.1-P	Field mustard	cytosol	43.63	42.55
Bra026605.1-P	Field mustard	cytosol	34.71	41.76
VIT_00s0214g00130.t01	Wine grape	cytosol	36.31	41.16
Solyc04g050990.2.1	Tomato	cytosol	38.53	40.74
PGSC0003DMT400031292	Potato	cytosol	38.22	40.4
KRG92586	Soybean	cytosol, plastid	38.85	40.26
Solyc05g055870.2.1	Tomato	cytosol	39.17	39.94
Bra026606.1-P	Field mustard	plasma membrane, vacuole	43.95	39.54
VIT_00s0214g00150.t01	Wine grape	cytosol	38.22	39.22
PGSC0003DMT400060018	Potato	cytosol	38.85	38.98
Bra035198.1-P	Field mustard	cytosol	31.53	38.67
KRH68844	Soybean	cytosol	37.9	37.54
VIT_00s0214g00060.t01	Wine grape	cytosol	33.76	36.93
Bra018579.1-P	Field mustard	cytosol	31.21	35.25
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	38.53	34.67
Bra030758.1-P	Field mustard	cytosol	29.94	34.56
VIT_00s0214g00090.t01	Wine grape	cytosol	36.94	34.42
Bra038174.1-P	Field mustard	cytosol	29.62	32.86
Bra029137.1-P	Field mustard	cytosol	25.16	27.24
Bra027000.1-P	Field mustard	cytosol	24.84	26.9
Bra019781.1-P	Field mustard	cytosol	23.89	26.13
Bra006966.1-P	Field mustard	cytosol	24.2	25.25
Bra027618.1-P	Field mustard	cytosol	22.93	24.83
Bra014456.1-P	Field mustard	cytosol	22.29	24.48
Bra023077.1-P	Field mustard	cytosol	21.02	22.45

Protein Annotations

EnsemblPlants:Bra024827.1	EnsemblPlants:Bra024827.1-P	EnsemblPlantsGene:Bra024827	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	PFAM:PF14299
SEG:seg	SUPFAM:SSF81383	UniParc:UPI000253F8D6	UniProt:M4E7S1	MapMan:35.1	:

Description

AT2G02230 (E=4e-067) AtPP2-B1 | AtPP2-B1 (Phloem protein 2-B1); carbohydrate binding

Coordinates

chrA06:+:23652391..23653554

Molecular Weight (calculated)

34737.9 Da

IEP (calculated)

4.700

GRAVY (calculated)

-0.456

Length

314 amino acids

Sequence
(BLAST)

001: MEQIQVGGGS SRNGAARLDT LPEDCISMVV SHSWPRDACV VASVSKTVKS AAESDLVWDK FLPPEYSSLV PPRSLDFSSK KEIYMSLADD SVLIDDGKKS
101: FWLEKASGKK CYMLSAMDLN IAWIDRPLYW KWKKDPESKF EKVAKLRHVC WFEIRGKISC GMLSKGTHYS VYAVLKIGGS GSRGLDDTPM EALVGFVGEE
201: AASKTFVLLE PKGTYPRGGY SSGSFREVST GCSWIEIPVE EVEEERETDG SVEEPKERGD GWSEVKLGNF YNGDGGCDDD GNKIEFSIMG TEQGDWKSGL
301: IFQGVEIRPK KEGD

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.