Factsheet for Solyc05g055870.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g116320.2.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02300.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT2G02300.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G02300.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G02300.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G02300.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400060018	Potato	cytosol	93.83	92.33
Solyc04g050990.2.1	Tomato	cytosol	67.21	69.7
KRG92586	Soybean	cytosol, plastid	51.95	52.81
VIT_00s0214g00130.t01	Wine grape	cytosol	46.75	51.99
KRH68844	Soybean	cytosol	50.0	48.58
VIT_00s0214g00150.t01	Wine grape	cytosol	47.4	47.71
VIT_00s0214g00160.t01	Wine grape	cytosol	48.38	47.6
VIT_00s0214g00060.t01	Wine grape	cytosol	44.16	47.39
CDY24793	Canola	cytosol	21.75	46.21
CDY17599	Canola	cytosol	42.21	45.94
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	51.3	45.27
AT2G02360.1	Thale cress	nucleus	39.94	45.22
Bra024822.1-P	Field mustard	cytosol	31.82	44.95
Solyc12g098190.1.1	Tomato	cytosol	37.99	44.83
CDY03057	Canola	cytosol	34.42	44.73
Solyc12g044930.1.1	Tomato	cytosol	37.66	44.27
AT5G24560.1	Thale cress	cytosol	27.92	44.1
CDY09378	Canola	cytosol	38.64	44.07
CDY63170	Canola	cytosol	35.39	43.78
CDY03056	Canola	cytosol	22.08	43.31
CDX88110	Canola	cytosol	16.88	42.62
Solyc01g100000.2.1	Tomato	cytosol	37.01	42.07
CDY65051	Canola	cytosol	30.84	42.04
VIT_00s0214g00090.t01	Wine grape	cytosol	45.78	41.84
CDY09383	Canola	cytosol	41.23	41.78
Solyc12g098200.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular	36.04	41.73
CDY17605	Canola	cytosol	39.61	41.5
Solyc01g099990.2.1	Tomato	cytosol	38.64	41.03
CDY09376	Canola	cytosol	25.65	40.72
Solyc04g056680.1.1	Tomato	cytosol	23.38	40.45
Bra026609.1-P	Field mustard	cytosol	43.83	40.42
CDY15823	Canola	cytosol	43.51	40.36
CDY09379	Canola	cytosol	32.47	40.32
AT2G02230.1	Thale cress	cytosol	43.83	40.18
Bra024825.1-P	Field mustard	cytosol	37.34	40.07
AT2G02250.1	Thale cress	cytosol	40.26	40.0
CDY17602	Canola	cytosol	40.26	39.74
Solyc01g100010.2.1	Tomato	cytosol	35.71	39.57
CDY17600	Canola	cytosol	36.69	39.51
Bra024823.1-P	Field mustard	cytosol	36.69	39.51
CDY70803	Canola	cytosol	34.09	39.47
Bra026604.1-P	Field mustard	cytosol	41.23	39.44
CDY17601	Canola	cytosol	37.66	39.32
Solyc11g006740.1.1	Tomato	cytosol	23.7	39.25
CDY03062	Canola	cytosol	40.58	39.19
Bra024827.1-P	Field mustard	cytosol	39.94	39.17
CDY03058	Canola	cytosol	36.36	39.16
CDY09382	Canola	cytosol	33.77	39.1
AT2G02240.1	Thale cress	cytosol	40.58	39.06
CDY09375	Canola	cytosol	37.01	39.04
Bra026603.1-P	Field mustard	cytosol	36.69	38.83
AT2G02350.2	Thale cress	cytosol, mitochondrion	37.01	38.78
Solyc12g096890.1.1	Tomato	cytosol	20.13	38.75
CDY68805	Canola	cytosol	21.75	38.73
CDY03060	Canola	cytosol	40.26	38.51
Bra026608.1-P	Field mustard	cytosol	34.74	38.49
AT2G02300.1	Thale cress	cytosol	35.06	38.03
Solyc05g053620.2.1	Tomato	cytosol	20.13	37.58
CDY03059	Canola	cytosol	39.61	36.64
CDY09380	Canola	cytosol	37.66	36.59
Bra024824.1-P	Field mustard	cytosol	39.94	36.5
AT2G02340.1	Thale cress	cytosol	36.04	36.39
Solyc10g051160.1.1	Tomato	cytosol	31.82	36.3
Bra026605.1-P	Field mustard	cytosol	28.9	34.1
AT2G02320.1	Thale cress	mitochondrion	33.12	33.22
Bra026606.1-P	Field mustard	plasma membrane, vacuole	37.34	32.95
AT2G02310.1	Thale cress	cytosol	32.79	32.9
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.43	30.56
CDY65052	Canola	cytosol	37.01	26.39
Solyc08g080360.2.1	Tomato	plastid	24.68	26.3
Solyc10g085490.1.1	Tomato	cytosol	25.32	26.09
Solyc10g083730.1.1	Tomato	cytosol	24.03	24.75
Solyc12g056410.1.1	Tomato	cytosol, plastid	23.05	24.57
Solyc09g008820.2.1	Tomato	cytosol	23.7	24.41
Solyc01g091700.2.1	Tomato	cytosol	21.75	23.34
Solyc10g017960.1.1	Tomato	cytosol	20.78	21.92
Solyc03g026160.2.1	Tomato	cytosol, extracellular	9.74	19.74

Protein Annotations

EnsemblPlants:Solyc05g055870.2.1	EnsemblPlantsGene:Solyc05g055870.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	PFAM:PF14299	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0002767441	UniProt:K4C2R2	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr5:-:65336699..65339030

Molecular Weight (calculated)

34298.5 Da

IEP (calculated)

5.265

GRAVY (calculated)

-0.378

Length

308 amino acids

Sequence
(BLAST)

001: MAVEIGRSSG GGGGDICHLP EGCIANVLSL TSPRDASRLS VVGTVFRSAG ESDAVWDRFL PSDYRDIISR SSDGPESFNV GSKKELYLYL CDHPFFIDGG
101: TKSFSLEKQS GKKCYMLAAR SLAIIWADTP RYWRWIPLPE SRFPEVAELL DVCWFDISGK INTSMLSPDT NYAAYFVFTT KSRTYGFDHQ SAEGAVGISG
201: HERKPQTVFL DPEAARRHMY QIVPRRSGLL SQMADMLRGG VNPPPPENDA QARYPQQRSD GWIEVELGEF FVKRGQDVEL EISLTEVKEG NWKSGLVVEG
301: IEIRPKEG

Best Arabidopsis Sequence Match ( AT2G02240.1 )
(BLAST)

001: MCGQHYTSII SSITTEASFE RVRTHEFIKF SKHKRFDQRH RSMMGQYHSG GEIVSPGTSP FDVLPEDCIS NIISFTSPRD ACVAASVSKT FESAVSSDCV
101: WDKFLPPEYE SLVSRSRVFA SKKELYFALC HNPVLIEDGK KSFWLEKASG KRCIMLSSKE LWITWGSSPE YWQWISIPES RFNKIAELLD VCWFEIRGKT
201: SARVLSPGTR YSAYIVFKTK DRCPGLGHLP VEVGLGLVGQ ESSKRFIYFI GPRDRRGRRE TRDVTKPDQR EDGWMEAELG EFFNEERCDE IEFSVIEIKS
301: PSWKSGLIIQ GIEFRPTKSQ

Arabidopsis Description

MEE66F-box protein At2g02240 [Source:UniProtKB/Swiss-Prot;Acc:Q3E6P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.