Factsheet for Solyc12g098190.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400043441	Potato	cytosol	94.64	94.64
Solyc12g098200.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular	66.67	65.41
Solyc12g096890.1.1	Tomato	cytosol	38.31	62.5
Solyc12g044930.1.1	Tomato	cytosol	62.07	61.83
Solyc04g056680.1.1	Tomato	cytosol	40.23	58.99
VIT_05s0051g00080.t01	Wine grape	cytosol	40.61	40.15
Solyc04g050990.2.1	Tomato	cytosol	45.59	40.07
Solyc01g099990.2.1	Tomato	cytosol	43.3	38.97
Solyc11g006740.1.1	Tomato	cytosol	27.2	38.17
Solyc01g100010.2.1	Tomato	cytosol	40.61	38.13
Solyc05g055870.2.1	Tomato	cytosol	44.83	37.99
Solyc01g100000.2.1	Tomato	cytosol	38.7	37.27
Solyc05g053620.2.1	Tomato	cytosol	22.61	35.76
Solyc10g051160.1.1	Tomato	cytosol	32.95	31.85
Solyc01g091700.2.1	Tomato	cytosol	24.9	22.65
Solyc08g080360.2.1	Tomato	plastid	24.9	22.49
Solyc12g056410.1.1	Tomato	cytosol, plastid	23.75	21.45
Solyc10g085490.1.1	Tomato	cytosol	23.75	20.74
Solyc09g008820.2.1	Tomato	cytosol	23.75	20.74
Solyc10g017960.1.1	Tomato	cytosol	22.22	19.86
Solyc10g083730.1.1	Tomato	cytosol	22.61	19.73
Solyc03g026160.2.1	Tomato	cytosol, extracellular	7.66	13.16

Protein Annotations

EnsemblPlants:Solyc12g098190.1.1	EnsemblPlantsGene:Solyc12g098190.1	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	SUPFAM:SSF81383	UniParc:UPI000276A062	UniProt:K4DHJ3
MapMan:35.1	:	:	:	:	:

Description

No Description!

Coordinates

chr12:-:65811278..65813020

Molecular Weight (calculated)

29809.1 Da

IEP (calculated)

5.102

GRAVY (calculated)

-0.474

Length

261 amino acids

Sequence
(BLAST)

001: MDYFGLMPED CLSEILSFTS PEDTARLSTS SRGFNFAAES DVVWEKFLPS DYQNIISKSK SLMASPSMKQ LYFSLCDSPI LTDGGKMSFS LDKKTGKKCF
101: MVSARELAIS WSDTPHYWSW SSHPDSRFSE VANLRFVCWL DMRGKIETRL LSKRTNYVAY LVFKLKSGYY GLETANTFVR FVDRESDNEA EERASVVSLS
201: TQEEHGENRS KRRDNGWLEI EMGKFFNDAG EDGDVEARLM EVRRLSAKGG LIVQGIEFRP E

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.