Factsheet for Solyc04g050990.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 2
cytosol 4
golgi 1
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g116320.2.1
Solyc06g072990.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02300.1	Solyc03g116320.2.1	AT3G47620.1	21798944
AT2G02300.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT2G02300.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT2G02300.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT2G02300.1	Solyc06g072990.1.1	AT3G49580.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400031292	Potato	cytosol	95.96	95.96
Solyc05g055870.2.1	Tomato	cytosol	69.7	67.21
KRG92586	Soybean	cytosol, plastid	54.21	53.14
VIT_00s0214g00130.t01	Wine grape	cytosol	46.8	50.18
KRH68844	Soybean	cytosol	53.54	50.16
VIT_00s0214g00160.t01	Wine grape	cytosol	50.17	47.6
VIT_00s0214g00060.t01	Wine grape	cytosol	45.45	47.04
VIT_00s0214g00150.t01	Wine grape	cytosol	48.15	46.73
AT2G02360.1	Thale cress	nucleus	42.09	45.96
AT5G24560.1	Thale cress	cytosol	29.97	45.64
Solyc12g098190.1.1	Tomato	cytosol	40.07	45.59
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	52.86	44.99
Bra024822.1-P	Field mustard	cytosol	33.0	44.95
CDY24793	Canola	cytosol	21.89	44.83
VIT_00s0214g00090.t01	Wine grape	cytosol	50.84	44.81
Solyc12g044930.1.1	Tomato	cytosol	39.39	44.66
CDY03056	Canola	cytosol	23.57	44.59
CDY09378	Canola	cytosol	40.4	44.44
Solyc01g100000.2.1	Tomato	cytosol	40.4	44.28
CDY63170	Canola	cytosol	37.04	44.18
Solyc12g098200.1.1	Tomato	cytosol, endoplasmic reticulum, extracellular	39.39	43.98
CDY17599	Canola	cytosol	41.75	43.82
CDY03057	Canola	cytosol	34.68	43.46
Solyc01g099990.2.1	Tomato	cytosol	42.42	43.45
Solyc01g100010.2.1	Tomato	cytosol	40.4	43.17
CDY17600	Canola	cytosol	41.08	42.66
Bra024823.1-P	Field mustard	cytosol	41.08	42.66
CDX88110	Canola	cytosol	17.51	42.62
CDY03058	Canola	cytosol	40.74	42.31
Bra024825.1-P	Field mustard	cytosol	40.4	41.81
CDY70803	Canola	cytosol	37.37	41.73
CDY09382	Canola	cytosol	37.37	41.73
CDY65051	Canola	cytosol	31.65	41.59
CDY17605	Canola	cytosol	41.08	41.5
Bra026608.1-P	Field mustard	cytosol	38.72	41.37
AT2G02250.1	Thale cress	cytosol	43.1	41.29
CDY09383	Canola	cytosol	41.75	40.79
CDY09379	Canola	cytosol	34.01	40.73
CDY17602	Canola	cytosol	42.76	40.71
AT2G02240.1	Thale cress	cytosol	43.1	40.0
Solyc11g006740.1.1	Tomato	cytosol	24.92	39.78
CDY09376	Canola	cytosol	25.93	39.69
CDY17601	Canola	cytosol	39.39	39.66
Bra026609.1-P	Field mustard	cytosol	44.44	39.52
CDY15823	Canola	cytosol	44.11	39.46
CDY03060	Canola	cytosol	42.76	39.44
Solyc04g056680.1.1	Tomato	cytosol	23.57	39.33
CDY68805	Canola	cytosol	22.9	39.31
Bra026604.1-P	Field mustard	cytosol	42.42	39.13
AT2G02300.1	Thale cress	cytosol	37.04	38.73
Bra024827.1-P	Field mustard	cytosol	40.74	38.53
AT2G02350.2	Thale cress	cytosol, mitochondrion	38.05	38.44
CDY09380	Canola	cytosol	40.74	38.17
Solyc12g096890.1.1	Tomato	cytosol	20.54	38.12
CDY09375	Canola	cytosol	37.37	38.01
CDY03062	Canola	cytosol	40.74	37.93
CDY03059	Canola	cytosol	42.42	37.84
Bra026603.1-P	Field mustard	cytosol	37.04	37.8
Solyc10g051160.1.1	Tomato	cytosol	34.34	37.78
AT2G02340.1	Thale cress	cytosol	38.72	37.7
AT2G02230.1	Thale cress	cytosol	42.42	37.5
Bra024824.1-P	Field mustard	cytosol	42.42	37.39
Bra026605.1-P	Field mustard	cytosol	30.64	34.87
Bra026606.1-P	Field mustard	plasma membrane, vacuole	40.4	34.38
AT2G02320.1	Thale cress	mitochondrion	35.35	34.2
AT2G02310.1	Thale cress	cytosol	34.34	33.22
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	23.91	32.87
Solyc05g053620.2.1	Tomato	cytosol	18.18	32.73
CDY65052	Canola	cytosol	39.73	27.31
Solyc10g085490.1.1	Tomato	cytosol	25.25	25.08
Solyc08g080360.2.1	Tomato	plastid	24.24	24.91
Solyc09g008820.2.1	Tomato	cytosol	24.58	24.41
Solyc10g083730.1.1	Tomato	cytosol	23.57	23.41
Solyc12g056410.1.1	Tomato	cytosol, plastid	21.89	22.49
Solyc01g091700.2.1	Tomato	cytosol	21.21	21.95
Solyc10g017960.1.1	Tomato	cytosol	20.2	20.55
Solyc03g026160.2.1	Tomato	cytosol, extracellular	8.75	17.11

Protein Annotations

EnsemblPlants:Solyc04g050990.2.1	EnsemblPlantsGene:Solyc04g050990.2	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:F-box-like_dom_sf
InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	PFAM:PF14299	SEG:seg	SUPFAM:SSF81383
UniParc:UPI0002766F8B	UniProt:K4BS61	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr4:-:49275342..49277997

Molecular Weight (calculated)

33555.9 Da

IEP (calculated)

6.067

GRAVY (calculated)

-0.379

Length

297 amino acids

Sequence
(BLAST)

001: MAVERFACGD ELPEGCIATA LSLTSPKDAC RLALVASTFR SAAESDAVWE RFLPPDYYDI ISRSIDGPDS LNFGSKKDLY LYLCDNPILI DGGTRSFSLE
101: KGSGKKCYML AARSLQIVWV DTPRHWRWIS LPESRFSEVA ELLDVCWFDI SGKINTNMLS PDTTYGAYLV FTTKTRTCGF ENQPAESSVG IAGHERYTHT
201: FYLNPQGGRR QYRYQVVPRR LGIFTHHMAR ILREETEDAP KGCRPKQRSD GWMEIELGEF FVKRGQEAEV EISLTEVKGG DRKAGLIIEG IDIRPKE

Best Arabidopsis Sequence Match ( AT2G02250.1 )
(BLAST)

001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI

Arabidopsis Description

PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.