CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026606.1-P	Field mustard	plasma membrane, vacuole	94.64	85.96
CDY70803	Canola	cytosol	65.93	78.57
CDY09382	Canola	cytosol	65.62	78.2
CDY03058	Canola	cytosol	68.45	75.87
CDY17600	Canola	cytosol	67.51	74.83
CDY65052	Canola	cytosol	89.59	65.74
CDY09378	Canola	cytosol	54.89	64.44
AT2G02240.1	Thale cress	cytosol	63.41	62.81
CDY63170	Canola	cytosol	48.58	61.85
CDY09379	Canola	cytosol	46.06	58.87
CDY65051	Canola	cytosol	41.96	58.85
CDY17599	Canola	cytosol	51.73	57.95
CDY03057	Canola	cytosol	42.59	56.96
CDY24793	Canola	cytosol	25.24	55.17
CDY03056	Canola	cytosol	24.92	50.32
CDY09375	Canola	cytosol	45.43	49.32
CDY09376	Canola	cytosol	29.02	47.42
CDY17605	Canola	cytosol	43.85	47.28
CDY17601	Canola	cytosol	41.01	44.07
CDY03062	Canola	cytosol	43.22	42.95
CDY09383	Canola	cytosol	41.01	42.76
CDY17602	Canola	cytosol	41.64	42.31
CDY68805	Canola	cytosol	23.03	42.2
VIT_00s0214g00130.t01	Wine grape	cytosol	36.28	41.52
CDY03059	Canola	cytosol	43.53	41.44
CDY62670	Canola	cytosol	3.79	41.38
CDY03060	Canola	cytosol	41.96	41.3
Solyc04g050990.2.1	Tomato	cytosol	38.17	40.74
CDY15823	Canola	cytosol	42.27	40.36
CDX88110	Canola	cytosol	15.46	40.16
PGSC0003DMT400031292	Potato	cytosol	37.54	40.07
VIT_00s0214g00060.t01	Wine grape	cytosol	35.96	39.72
CDX87293	Canola	cytosol	31.23	38.67
CDY39994	Canola	cytosol	31.23	38.67
KRG92586	Soybean	cytosol, plastid	36.59	38.28
Solyc05g055870.2.1	Tomato	cytosol	36.59	37.66
KRH68844	Soybean	cytosol	36.59	36.59
PGSC0003DMT400060018	Potato	cytosol	35.96	36.42
CDX95006	Canola	cytosol	31.86	36.33
CDY71953	Canola	cytosol	31.86	36.33
VIT_00s0214g00150.t01	Wine grape	cytosol	35.02	36.27
CDY72024	Canola	plastid	30.28	35.29
CDY31110	Canola	plastid	29.97	35.19
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	37.85	34.38
VIT_00s0214g00090.t01	Wine grape	cytosol	35.65	33.53
CDY38992	Canola	cytosol	29.34	32.86
CDY54100	Canola	cytosol	29.02	32.51
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	18.61	27.31
CDY32595	Canola	cytosol	24.61	26.99
CDY38901	Canola	cytosol	23.66	26.98
CDY57080	Canola	cytosol	22.71	25.53
CDY45973	Canola	cytosol	23.34	25.52
CDX73584	Canola	cytosol	23.34	25.52
CDY63226	Canola	plastid	23.34	25.52
CDX89095	Canola	cytosol	22.71	25.17
CDX79690	Canola	cytosol	23.34	25.17
CDX78140	Canola	cytosol	23.66	24.92
CDX84551	Canola	cytosol	23.03	24.83
CDX98047	Canola	cytosol	22.4	24.74
CDY42484	Canola	cytosol	22.08	24.56
CDY16361	Canola	extracellular	14.83	24.48
CDY47354	Canola	cytosol	22.08	24.14
CDY49201	Canola	cytosol	21.77	23.79
CDX95004	Canola	peroxisome, plasma membrane, vacuole	19.56	19.2

Protein Annotations

EnsemblPlants:CDY09380	EnsemblPlantsGene:GSBRNA2T00030855001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	ProteinID:CDY09380	ProteinID:CDY09380.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EEB549	UniProt:A0A078F4G0	MapMan:35.1	:

Description

BnaA02g26300DBnaA02g26300D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4G0]

Coordinates

chrLK031995:+:372303..376207

Molecular Weight (calculated)

35853.6 Da

IEP (calculated)

7.379

GRAVY (calculated)

-0.416

Length

317 amino acids

Sequence
(BLAST)

001: MHHQDSPSSG GPFSSNKKRF SARCDDYVLI EGGKMIPDAG DLMHATMPSP FDSLPVDCIS TIISFTSPRD ACVAASVSKT FESAVKSDTV WEKFLPSEYS
101: SLIPQYSRVF LSKKELYFAL CDDPVLIEDG KKSFWLEKAS GKRCIMLSLK ESSITWGDTP QYWRWISIPE SRFEKIAELL NVCWFNIGDG MHTRYLSPRT
201: HYSVYIVFKT KNGCPNLGDS PVDVGVGLVG QEPSQKLIYF IGPPRRGRGR GRRRETETRD VTRPEAREDG WMEAELGEFY NDSCCDDISF SIIKTNTPHW
301: KSGLIVQGIE FRPAKIR

Best Arabidopsis Sequence Match ( AT2G02250.1 )
(BLAST)

001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI

Arabidopsis Description

PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.