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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02230.1 CDX68112 AT1G75950.1 12795696
AT2G02230.1 CDX73212 AT1G75950.1 12795696
AT2G02230.1 CDX80590 AT1G75950.1 12795696
AT2G02230.1 CDX85931 AT1G75950.1 12795696
AT2G02230.1 CDX87650 AT1G75950.1 12795696
AT2G02230.1 CDY13521 AT1G75950.1 12795696
AT2G02230.1 CDY39073 AT1G75950.1 12795696
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY62670 Canola cytosol 8.43 96.55
CDY09383 Canola cytosol 87.35 95.39
CDY17602 Canola cytosol 67.77 72.12
CDY17605 Canola cytosol 63.86 72.11
CDY17601 Canola cytosol 62.95 70.85
CDY03060 Canola cytosol 67.77 69.88
CDY03062 Canola cytosol 64.46 67.08
AT2G02230.1 Thale cress cytosol 67.47 66.67
CDY03059 Canola cytosol 66.27 66.07
CDY03058 Canola cytosol 45.48 52.8
CDY03057 Canola cytosol 37.65 52.74
CDY17600 Canola cytosol 44.58 51.75
CDY17599 Canola cytosol 43.67 51.24
CDY09382 Canola cytosol 40.36 50.38
CDY09378 Canola cytosol 40.06 49.26
CDY70803 Canola cytosol 39.46 49.25
CDY09379 Canola cytosol 36.45 48.79
CDY63170 Canola cytosol 35.24 46.99
CDY09375 Canola cytosol 41.27 46.92
CDY65051 Canola cytosol 31.33 46.02
CDY03056 Canola cytosol 21.39 45.22
PGSC0003DMT400031292 Potato cytosol 39.76 44.44
Solyc04g050990.2.1 Tomato cytosol 39.46 44.11
KRG92586 Soybean cytosol, plastid 40.06 43.89
Solyc05g055870.2.1 Tomato cytosol 40.36 43.51
VIT_00s0214g00130.t01 Wine grape cytosol 35.84 42.96
CDX87293 Canola cytosol 32.83 42.58
CDY39994 Canola cytosol 32.83 42.58
CDY09380 Canola cytosol 40.36 42.27
CDY68805 Canola cytosol 21.99 42.2
PGSC0003DMT400060018 Potato cytosol 39.76 42.17
CDY24793 Canola cytosol 18.37 42.07
VIT_00s0214g00150.t01 Wine grape cytosol 38.55 41.83
CDY09376 Canola cytosol 24.4 41.75
KRH68844 Soybean cytosol 39.76 41.64
VIT_00s0214g00060.t01 Wine grape cytosol 34.04 39.37
CDX88110 Canola cytosol 13.86 37.7
CDX95006 Canola cytosol 31.02 37.05
CDY72024 Canola plastid 30.12 36.76
CDY31110 Canola plastid 29.52 36.3
VIT_00s0214g00090.t01 Wine grape cytosol 36.75 36.2
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 37.95 36.1
CDY71953 Canola cytosol 29.82 35.61
CDY38992 Canola cytosol 28.92 33.92
CDY54100 Canola cytosol 28.61 33.57
CDY65052 Canola cytosol 40.06 30.79
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 18.67 28.7
CDX73584 Canola cytosol 22.89 26.21
CDX78140 Canola cytosol 23.19 25.58
CDY38901 Canola cytosol 20.78 24.82
CDY32595 Canola cytosol 21.39 24.57
CDY42484 Canola cytosol 20.78 24.21
CDX89095 Canola cytosol 20.78 24.13
CDY63226 Canola plastid 20.78 23.79
CDY45973 Canola cytosol 20.78 23.79
CDX79690 Canola cytosol 20.78 23.47
CDY47354 Canola cytosol 20.48 23.45
CDY57080 Canola cytosol 19.88 23.4
CDX98047 Canola cytosol 20.18 23.34
CDX84551 Canola cytosol 20.48 23.13
CDY49201 Canola cytosol 20.18 23.1
CDY16361 Canola extracellular 12.35 21.35
CDX95004 Canola peroxisome, plasma membrane, vacuole 19.28 19.81
Protein Annotations
EnsemblPlants:CDY15823EnsemblPlantsGene:GSBRNA2T00090155001GO:GO:0003674GO:GO:0005488GO:GO:0005515InterPro:F-box-like_dom_sf
InterPro:F-box_domInterPro:IPR001810InterPro:PP2-likePANTHER:PTHR32278PANTHER:PTHR32278:SF6PFAM:PF00646
PFAM:PF14299PFscan:PS50181ProteinID:CDY15823ProteinID:CDY15823.1SEG:segSUPFAM:SSF81383
UniParc:UPI0004EF1AB5UniProt:A0A078FTY4MapMan:35.1:::
Description
BnaC02g34420DBnaC02g34420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTY4]
Coordinates
chrLK032058:-:555119..556551
Molecular Weight (calculated)
37346.3 Da
IEP (calculated)
5.223
GRAVY (calculated)
-0.406
Length
332 amino acids
Sequence
(BLAST)
001: MEQTQDLKCG GGISRNDAIV SVGATTSRFD TLPEDCISMV IFHTTPRDAC VVASVSRTVK SAAESDLVWE KFLPPEYSSL ALPPSLDCSS KKKIYLSLAD
101: DPVLIDEGKK SFWLEKSTGK KCYMLSAMDL KITWSDSPAY WQWVTVPESK FEKVAELCNV CWFEIRGKIS VRMLSKGTRY SVYLVFKRAS SRSYGFDHTP
201: IEAEVGFAGK EVRKTFVFLE PSDTDPRSGY GYSGVSLAAV SRAFRTRRPW MRFPREEVEG ERESGGNVEE PKERGDKWSE VKLGSFYIND GGCDDGDEIE
301: VAIMETRMGQ WKSGLLFQGI EIRPVKEEEV TK
Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.