CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
mitochondrion 2
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09380	Canola	cytosol	65.74	89.59
Bra026606.1-P	Field mustard	plasma membrane, vacuole	68.29	84.53
CDY70803	Canola	cytosol	48.38	78.57
CDY09382	Canola	cytosol	48.15	78.2
CDY03058	Canola	cytosol	50.0	75.52
CDY17600	Canola	cytosol	49.31	74.48
CDY09378	Canola	cytosol	40.28	64.44
AT2G02240.1	Thale cress	cytosol	46.53	62.81
CDY63170	Canola	cytosol	35.42	61.45
CDY65051	Canola	cytosol	31.02	59.29
CDY09379	Canola	cytosol	33.8	58.87
CDY17599	Canola	cytosol	37.04	56.54
CDY03057	Canola	cytosol	30.56	55.7
CDY24793	Canola	cytosol	18.29	54.48
CDY03056	Canola	cytosol	17.82	49.04
CDY09375	Canola	cytosol	32.87	48.63
CDY09376	Canola	cytosol	21.53	47.94
CDY17605	Canola	cytosol	31.94	46.94
CDY17601	Canola	cytosol	29.4	43.05
CDY03062	Canola	cytosol	31.48	42.63
CDY09383	Canola	cytosol	29.86	42.43
CDY17602	Canola	cytosol	30.09	41.67
CDY68805	Canola	cytosol	16.67	41.62
CDY62670	Canola	cytosol	2.78	41.38
CDY03059	Canola	cytosol	31.48	40.84
VIT_00s0214g00130.t01	Wine grape	cytosol	26.16	40.79
CDY03060	Canola	cytosol	30.32	40.68
CDY15823	Canola	cytosol	30.79	40.06
Solyc04g050990.2.1	Tomato	cytosol	27.31	39.73
CDX88110	Canola	cytosol	11.11	39.34
PGSC0003DMT400031292	Potato	cytosol	26.85	39.06
VIT_00s0214g00060.t01	Wine grape	cytosol	25.69	38.68
CDX87293	Canola	cytosol	22.69	38.28
CDY39994	Canola	cytosol	22.69	38.28
KRG92586	Soybean	cytosol, plastid	26.16	37.29
Solyc05g055870.2.1	Tomato	cytosol	26.39	37.01
PGSC0003DMT400060018	Potato	cytosol	26.39	36.42
CDY71953	Canola	cytosol	22.92	35.61
CDX95006	Canola	cytosol	22.92	35.61
KRH68844	Soybean	cytosol	25.93	35.33
VIT_00s0214g00150.t01	Wine grape	cytosol	25.0	35.29
CDY72024	Canola	plastid	21.76	34.56
CDY31110	Canola	plastid	21.53	34.44
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	27.08	33.52
CDY38992	Canola	cytosol	21.53	32.86
VIT_00s0214g00090.t01	Wine grape	cytosol	25.46	32.64
CDY54100	Canola	cytosol	20.83	31.8
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	13.43	26.85
CDY32595	Canola	cytosol	17.59	26.3
CDY38901	Canola	cytosol	16.9	26.26
CDY57080	Canola	cytosol	16.44	25.18
CDY63226	Canola	plastid	16.9	25.17
CDY45973	Canola	cytosol	16.9	25.17
CDX79690	Canola	cytosol	16.9	24.83
CDX73584	Canola	cytosol	16.67	24.83
CDX89095	Canola	cytosol	16.44	24.83
CDX84551	Canola	cytosol	16.67	24.49
CDX98047	Canola	cytosol	16.2	24.39
CDX78140	Canola	cytosol	16.9	24.25
CDY42484	Canola	cytosol	15.97	24.21
CDY16361	Canola	extracellular	10.65	23.96
CDY47354	Canola	cytosol	15.97	23.79
CDY49201	Canola	cytosol	15.74	23.45
CDX95004	Canola	peroxisome, plasma membrane, vacuole	14.12	18.89

Protein Annotations

EnsemblPlants:CDY65052	EnsemblPlantsGene:GSBRNA2T00044096001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	ProteinID:CDY65052	ProteinID:CDY65052.1	SEG:seg
SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI0004EECADA	UniProt:A0A078JI26	MapMan:35.1	:

Description

BnaC02g47880DBnaC02g47880D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JI26]

Coordinates

chrLK034642:+:16944..19979

Molecular Weight (calculated)

49231.8 Da

IEP (calculated)

6.627

GRAVY (calculated)

-0.329

Length

432 amino acids

Sequence
(BLAST)

001: MVHGIELGSH WTARSGVVRC VFTQEVPQLV TGIPFKIYGL LKPKLLSPDT QYSAYVVYKA KDQIQDVQKS FGVGVIVHET PEGAKWERLE LTKLEKREDG
101: WVEANFGELL NDGGFMDDRD EIWFRISEIK YSYWTSGFII QGIEFRPVKK IPDAGDLMHA TMPSPFDSLP VDCISTIISF TSPRDACVAA SISKTFESAV
201: KSDTVWEKFL PSEYSSLIPQ YSRVFMSKKE LYFALCDDPV LIEDGKKSFW LEKASGKRCI MLSLKESSIT WGTSPQYWRW ISIPESRFEK IAELLNVCWF
301: DIGDGMHTRY LSPRTHYSVY IVFKTKNGCP NLGDSPVDVG VGLVGQEPSQ KLIYFIGPPG RGRGRRRRRE TETRDVTRPE AREDGWMEAE LGEFYNDSCC
401: DDISFSIIKT NTPHWKSGLI VQGIEFRPAK VR

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.