CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY09382	Canola	cytosol	96.24	96.24
Bra026608.1-P	Field mustard	cytosol	96.62	92.45
CDY03058	Canola	cytosol	79.32	73.78
CDY17600	Canola	cytosol	78.95	73.43
CDY09378	Canola	cytosol	67.67	66.67
CDY09380	Canola	cytosol	78.57	65.93
CDY63170	Canola	cytosol	58.27	62.25
AT2G02240.1	Thale cress	cytosol	70.3	58.44
CDY03057	Canola	cytosol	50.38	56.54
CDY17599	Canola	cytosol	60.15	56.54
CDY09379	Canola	cytosol	52.26	56.05
CDY65051	Canola	cytosol	47.37	55.75
CDY24793	Canola	cytosol	26.69	48.97
CDY65052	Canola	cytosol	78.57	48.38
CDY09376	Canola	cytosol	34.59	47.42
CDY09375	Canola	cytosol	51.5	46.92
CDY03056	Canola	cytosol	27.44	46.5
CDY17605	Canola	cytosol	49.62	44.9
CDY17601	Canola	cytosol	48.5	43.73
CDY03062	Canola	cytosol	50.75	42.32
CDY17602	Canola	cytosol	49.62	42.31
VIT_00s0214g00130.t01	Wine grape	cytosol	43.61	41.88
CDY09383	Canola	cytosol	47.74	41.78
CDY03060	Canola	cytosol	48.5	40.06
CDY15823	Canola	cytosol	49.25	39.46
CDX88110	Canola	cytosol	18.05	39.34
CDY03059	Canola	cytosol	49.25	39.34
CDY68805	Canola	cytosol	25.19	38.73
VIT_00s0214g00060.t01	Wine grape	cytosol	40.98	37.98
CDY62670	Canola	cytosol	4.14	37.93
Solyc04g050990.2.1	Tomato	cytosol	41.73	37.37
CDX87293	Canola	cytosol	35.71	37.11
CDY39994	Canola	cytosol	35.71	37.11
PGSC0003DMT400031292	Potato	cytosol	40.98	36.7
VIT_00s0214g00150.t01	Wine grape	cytosol	41.35	35.95
KRG92586	Soybean	cytosol, plastid	40.6	35.64
Solyc05g055870.2.1	Tomato	cytosol	39.47	34.09
VIT_00s0214g00090.t01	Wine grape	cytosol	42.48	33.53
CDY71953	Canola	cytosol	34.96	33.45
CDY31110	Canola	plastid	33.83	33.33
PGSC0003DMT400060018	Potato	cytosol	39.1	33.23
CDY72024	Canola	plastid	33.83	33.09
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	43.23	32.95
KRH68844	Soybean	cytosol	39.1	32.81
CDX95006	Canola	cytosol	34.21	32.73
CDY54100	Canola	cytosol	33.83	31.8
CDY38992	Canola	cytosol	33.83	31.8
CDY32595	Canola	cytosol	29.32	26.99
CDY38901	Canola	cytosol	28.2	26.98
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	20.68	25.46
CDY57080	Canola	cytosol	26.69	25.18
CDX73584	Canola	cytosol	27.07	24.83
CDY42484	Canola	cytosol	26.32	24.56
CDX79690	Canola	cytosol	27.07	24.49
CDX89095	Canola	cytosol	26.32	24.48
CDX84551	Canola	cytosol	26.69	24.15
CDX98047	Canola	cytosol	25.94	24.04
CDX78140	Canola	cytosol	27.07	23.92
CDY63226	Canola	plastid	25.19	23.1
CDY45973	Canola	cytosol	25.19	23.1
CDY47354	Canola	cytosol	24.81	22.76
CDY49201	Canola	cytosol	24.44	22.41
CDY16361	Canola	extracellular	15.41	21.35
CDX95004	Canola	peroxisome, plasma membrane, vacuole	22.56	18.58

Protein Annotations

EnsemblPlants:CDY70803	EnsemblPlantsGene:GSBRNA2T00007721001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF00646	PFAM:PF14299	PFscan:PS50181	ProteinID:CDY70803	ProteinID:CDY70803.1	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0004EEAA13	UniProt:A0A078JTC7	MapMan:35.1	:	:

Description

BnaC02g47790DBnaC02g47790D protein [Source:UniProtKB/TrEMBL;Acc:A0A078JTC7]

Coordinates

chrLK043400:-:850..2297

Molecular Weight (calculated)

29655.1 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.255

Length

266 amino acids

Sequence
(BLAST)

001: MEATMGQSHG RESIISGPSP FDSLPVDCIS SIISFTSPRD ACNAASVSKT LESAAKSDSL WEKFLPSEYT SLVPQYSRVF SSKKELYFAL CDEPLLIEDG
101: KKSFWLEKAS GKRCIMISPK EVSITWGSSP EHWQWISIPE SRFEKIAELI DVCWFEIRGG MHTRYLTPGT RYSVYIVFNT KNGCPGLGDL PVDAGVGLVG
201: QESPQKLIYF VGPQARDDGW MEAELGQFYN DSCCDDISLS VVKTNTPDWK SGLIIQGFEF RPAKTR

Best Arabidopsis Sequence Match ( AT2G02240.1 )
(BLAST)

001: MCGQHYTSII SSITTEASFE RVRTHEFIKF SKHKRFDQRH RSMMGQYHSG GEIVSPGTSP FDVLPEDCIS NIISFTSPRD ACVAASVSKT FESAVSSDCV
101: WDKFLPPEYE SLVSRSRVFA SKKELYFALC HNPVLIEDGK KSFWLEKASG KRCIMLSSKE LWITWGSSPE YWQWISIPES RFNKIAELLD VCWFEIRGKT
201: SARVLSPGTR YSAYIVFKTK DRCPGLGHLP VEVGLGLVGQ ESSKRFIYFI GPRDRRGRRE TRDVTKPDQR EDGWMEAELG EFFNEERCDE IEFSVIEIKS
301: PSWKSGLIIQ GIEFRPTKSQ

Arabidopsis Description

MEE66F-box protein At2g02240 [Source:UniProtKB/Swiss-Prot;Acc:Q3E6P4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.