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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 2
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX68112
CDX73212
CDX80590
CDX85931
CDX87650
CDY13521
CDY39073

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G02360.1 CDX68112 AT1G75950.1 21798944
AT2G02360.1 CDX73212 AT1G75950.1 21798944
AT2G02360.1 CDX80590 AT1G75950.1 21798944
AT2G02360.1 CDX85931 AT1G75950.1 21798944
AT2G02360.1 CDX87650 AT1G75950.1 21798944
AT2G02360.1 CDY13521 AT1G75950.1 21798944
AT2G02360.1 CDY39073 AT1G75950.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra024822.1-P Field mustard cytosol 73.85 95.87
CDY03057 Canola cytosol 74.56 89.03
AT2G02360.1 Thale cress nucleus 68.55 71.32
CDY03056 Canola cytosol 39.22 70.7
CDY03058 Canola cytosol 61.13 60.49
CDY70803 Canola cytosol 56.54 60.15
CDY17600 Canola cytosol 60.42 59.79
CDY09382 Canola cytosol 55.48 59.02
CDY09378 Canola cytosol 55.48 58.15
CDY09379 Canola cytosol 50.88 58.06
CDY65051 Canola cytosol 44.88 56.19
CDY09375 Canola cytosol 57.95 56.16
AT2G02340.1 Thale cress cytosol 60.42 56.07
CDY63170 Canola cytosol 48.76 55.42
AT2G02350.2 Thale cress cytosol, mitochondrion 57.24 55.1
CDY09380 Canola cytosol 57.95 51.73
CDY68805 Canola cytosol 31.45 51.45
AT2G02320.1 Thale cress mitochondrion 55.48 51.14
CDY24793 Canola cytosol 26.15 51.03
CDY62670 Canola cytosol 4.95 48.28
CDY17605 Canola cytosol 48.76 46.94
CDY17601 Canola cytosol 48.06 46.1
VIT_00s0214g00130.t01 Wine grape cytosol 44.88 45.85
CDY17602 Canola cytosol 50.53 45.83
CDY09383 Canola cytosol 48.76 45.39
CDY09376 Canola cytosol 31.1 45.36
CDY03060 Canola cytosol 50.53 44.41
CDY03062 Canola cytosol 49.82 44.2
CDY15823 Canola cytosol 51.24 43.67
KRG92586 Soybean cytosol, plastid 45.23 42.24
Solyc05g055870.2.1 Tomato cytosol 45.94 42.21
VIT_00s0214g00060.t01 Wine grape cytosol 42.76 42.16
PGSC0003DMT400060018 Potato cytosol 46.29 41.85
Solyc04g050990.2.1 Tomato cytosol 43.82 41.75
CDY03059 Canola cytosol 48.76 41.44
CDX87293 Canola cytosol 37.46 41.41
CDY39994 Canola cytosol 37.46 41.41
PGSC0003DMT400031292 Potato cytosol 43.11 41.08
VIT_00s0214g00150.t01 Wine grape cytosol 43.82 40.52
CDY72024 Canola plastid 38.52 40.07
CDX95006 Canola cytosol 38.87 39.57
KRH68844 Soybean cytosol 44.17 39.43
CDY31110 Canola plastid 37.46 39.26
CDY71953 Canola cytosol 38.16 38.85
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 47.7 38.68
CDX88110 Canola cytosol 16.61 38.52
CDY54100 Canola cytosol 38.52 38.52
CDY38992 Canola cytosol 38.52 38.52
VIT_00s0214g00090.t01 Wine grape cytosol 44.88 37.69
CDY65052 Canola cytosol 56.54 37.04
CDX80451 Canola cytosol, endoplasmic reticulum, plasma membrane 24.73 32.41
CDY38901 Canola cytosol 28.62 29.14
CDY32595 Canola cytosol 29.33 28.72
CDY57080 Canola cytosol 27.56 27.66
CDX98047 Canola cytosol 27.56 27.18
CDX73584 Canola cytosol 27.56 26.9
CDY42484 Canola cytosol 26.86 26.67
CDX78140 Canola cytosol 27.92 26.25
CDX89095 Canola cytosol 26.5 26.22
CDY63226 Canola plastid 26.15 25.52
CDY45973 Canola cytosol 26.15 25.52
CDX79690 Canola cytosol 26.15 25.17
CDX84551 Canola cytosol 25.8 24.83
CDY49201 Canola cytosol 25.09 24.48
CDY47354 Canola cytosol 25.09 24.48
CDY16361 Canola extracellular 15.19 22.4
CDX95004 Canola peroxisome, plasma membrane, vacuole 22.61 19.81
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1UniProt:A0A078FWW9EnsemblPlants:CDY17599ProteinID:CDY17599ProteinID:CDY17599.1
InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515EnsemblPlantsGene:GSBRNA2T00001803001
InterPro:IPR001810PFAM:PF00646PFAM:PF14299InterPro:PP2-likePFscan:PS50181PANTHER:PTHR32278
PANTHER:PTHR32278:SF6SMART:SM00256SUPFAM:SSF81383UniParc:UPI0004EEE075SEG:seg:
Description
BnaA06g34180DBnaA06g34180D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWW9]
Coordinates
chrLK032076:+:46041..47058
Molecular Weight (calculated)
32042.9 Da
IEP (calculated)
4.507
GRAVY (calculated)
-0.296
Length
283 amino acids
Sequence
(BLAST)
001: MGKNHGVDSS GEGRGKIGSA SSPFDSFPED CISKIISFTS PRDTCVAATV SKAFESAVKS DVVWEKFLPL EYESLVPRSR EFSSKKEMYF ALCDEPVLID
101: DGTKSFWLEK ASGKRCIMLS AMNISIIWGD TPQYWEWITI PEARFKRVAE LLNVCWFEIR GRVNTRVLSP RTRYSAYLVF KKADHCYGFD DVAVEAGVGV
201: VGHEASTRTI CFEMDDDDEG EMGWIYPQER EDGWMEVELG EFFTGGDMMD SHEIEMSALE TRELGWKRGL IIQGIEIRPA NIQ
Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)
001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
Arabidopsis Description
PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.