Factsheet for AT2G02350.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 3
cytosol 2
mitochondrion 3
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G02360.1	Thale cress	nucleus	59.52	64.34
Bra024822.1-P	Field mustard	cytosol	43.2	58.26
CDY17599	Canola	cytosol	55.1	57.24
CDY03057	Canola	cytosol	45.92	56.96
AT2G02340.1	Thale cress	cytosol	55.78	53.77
AT2G02320.1	Thale cress	mitochondrion	51.7	49.51
CDY03056	Canola	cytosol	25.51	47.77
AT2G02240.1	Thale cress	cytosol	50.34	46.25
AT2G02250.1	Thale cress	cytosol	48.3	45.81
AT2G02310.1	Thale cress	cytosol	46.6	44.63
AT2G02300.1	Thale cress	cytosol	42.52	44.01
AT5G24560.1	Thale cress	cytosol	28.23	42.56
VIT_00s0214g00130.t01	Wine grape	cytosol	38.1	40.43
Solyc04g050990.2.1	Tomato	cytosol	38.44	38.05
PGSC0003DMT400031292	Potato	cytosol	38.1	37.71
VIT_00s0214g00150.t01	Wine grape	cytosol	39.12	37.58
AT2G02230.1	Thale cress	cytosol	42.52	37.2
Solyc05g055870.2.1	Tomato	cytosol	38.78	37.01
AT1G80110.1	Thale cress	cytosol	32.31	36.97
VIT_00s0214g00060.t01	Wine grape	cytosol	35.37	36.24
KRG92586	Soybean	cytosol, plastid	37.07	35.97
PGSC0003DMT400060018	Potato	cytosol	38.1	35.78
AT1G56250.1	Thale cress	cytosol	34.01	35.46
AT1G56240.1	Thale cress	cytosol	33.67	34.86
KRH68844	Soybean	cytosol	37.41	34.7
AT1G09155.1	Thale cress	cytosol	33.67	34.26
VIT_00s0214g00090.t01	Wine grape	cytosol	38.78	33.83
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	39.46	33.24
AT5G52120.1	Thale cress	cytosol	22.45	22.68
AT3G53000.1	Thale cress	cytosol	22.79	22.33
AT3G61060.2	Thale cress	cytosol	21.09	21.31
AT1G63090.1	Thale cress	cytosol	19.39	19.72
AT1G12710.2	Thale cress	cytosol	19.05	16.82

Protein Annotations

Gene3D:1.20.1280.50	MapMan:35.1	EntrezGene:814766	ProteinID:AAC78517.2	EMBL:AF263379	ProteinID:ANM61389.1
ArrayExpress:AT2G02350	EnsemblPlantsGene:AT2G02350	RefSeq:AT2G02350	TAIR:AT2G02350	RefSeq:AT2G02350-TAIR-G	EnsemblPlants:AT2G02350.2
Unigene:At.41498	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016567	GO:GO:0019538
InterPro:IPR001810	RefSeq:NP_001318181.1	RefSeq:NP_565282.3	PFAM:PF00646	PFAM:PF14299	InterPro:PP2-like
PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	UniProt:Q9FV02	Symbol:SKIP3	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0000ED934C	:	:	:	:

Description

SKIP3F-box protein SKIP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FV02]

Coordinates

chr2:-:617800..619138

Molecular Weight (calculated)

33355.4 Da

IEP (calculated)

7.900

GRAVY (calculated)

-0.133

Length

294 amino acids

Sequence
(BLAST)

001: MIRLRTLIEK NRSESRKKIV SSTLDSLPEG CISNIISFTS PEDACVAAAV SKIFESAVKS DIVWEKFLPT DYESLITPSR VFSSKKELYF SLCNDPLLIE
101: DGKMSLWLEK ASGKRCIMLS ATAMNLSSMA DMSQRFLWIP CPESRFETVA ALREAYRFEF NCRMNTRVLS LRTRYSVYIV FKKADNWCGF KGVSIEAVVG
201: IVGEESFRSF ICFDTHGKGQ ARKRKVVAKP ELREDGWMET EIGEFYNEGG LMSSDEVEIS TVEGKYAQQK RGLVILGIEI RPAKILEEFS VCRL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.