Factsheet for AT1G56240.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G56250.1	Thale cress	cytosol	89.79	90.43
CDY54100	Canola	cytosol	82.04	82.33
Bra038174.1-P	Field mustard	cytosol	82.04	82.33
CDY38992	Canola	cytosol	81.69	81.98
AT1G09155.1	Thale cress	cytosol	72.89	71.63
VIT_14s0060g02020.t01	Wine grape	cytosol	52.82	52.63
VIT_14s0060g02000.t01	Wine grape	cytosol	52.82	52.08
KRH33867	Soybean	cytosol	44.01	47.35
KRH68480	Soybean	cytosol	46.83	46.34
KRG96762	Soybean	cytosol	46.48	45.99
Solyc01g100000.2.1	Tomato	cytosol	42.25	44.28
PGSC0003DMT400063744	Potato	cytosol	43.66	43.97
Solyc01g100010.2.1	Tomato	cytosol	42.96	43.88
AT1G80110.1	Thale cress	cytosol	34.15	37.74
AT5G24560.1	Thale cress	cytosol	25.35	36.92
AT2G02360.1	Thale cress	nucleus	35.21	36.76
AT2G02350.2	Thale cress	cytosol, mitochondrion	34.86	33.67
AT2G02340.1	Thale cress	cytosol	34.86	32.46
AT2G02240.1	Thale cress	cytosol	35.56	31.56
AT2G02300.1	Thale cress	cytosol	30.99	30.99
AT2G02250.1	Thale cress	cytosol	33.8	30.97
AT2G02230.1	Thale cress	cytosol	35.56	30.06
AT2G02320.1	Thale cress	mitochondrion	32.39	29.97
AT2G02310.1	Thale cress	cytosol	32.04	29.64
AT3G53000.1	Thale cress	cytosol	24.3	23.0
AT5G52120.1	Thale cress	cytosol	23.24	22.68
AT1G63090.1	Thale cress	cytosol	22.54	22.15
AT3G61060.2	Thale cress	cytosol	21.48	20.96
AT1G12710.2	Thale cress	cytosol	23.24	19.82

Protein Annotations

MapMan:35.1	EntrezGene:842077	ProteinID:AAG50910.1	ProteinID:AEE33368.1	ArrayExpress:AT1G56240	EnsemblPlantsGene:AT1G56240
RefSeq:AT1G56240	TAIR:AT1G56240	RefSeq:AT1G56240-TAIR-G	EnsemblPlants:AT1G56240.1	TAIR:AT1G56240.1	Symbol:AtPP2-B13
EMBL:BT012215	EMBL:BT015705	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0030246	InterPro:IPR001810	RefSeq:NP_176020.1	PFAM:PF14299	PO:PO:0000293
InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF15	UniProt:Q9C7J9	SUPFAM:SSF81383
UniParc:UPI00000A138E	:	:	:	:	:

Description

PP2B13F-box protein PP2-B13 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7J9]

Coordinates

chr1:-:21056099..21057577

Molecular Weight (calculated)

31943.1 Da

IEP (calculated)

6.906

GRAVY (calculated)

-0.378

Length

284 amino acids

Sequence
(BLAST)

001: MMMLPEACVA NILAFTSPAD AFSSSEVSSV FRLAGDSDFV WEKFLPSHYK SLISQSTDHH RIFSSKKEIY RCLCDSLLID NARKLFKINK FSGKISYILS
101: ARDISITYSD HASYCSWSNV SDSRFSESAE LITTDRLEIK GKIQTTVLSP NTKYGAYLIM KVTNGAYGLD LVPAETSVKS KNGQNNKNTT YLCCLDEKKQ
201: QMKRLFYGNR EERMAMTVEA VGGDGKRREP KARDDGWLEI ELGEFVTREG EDDEVNMSLT EVKGYQLKGG IVIDGIEVRP IPLK

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.