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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • plastid 2
  • mitochondrion 2
  • cytosol 2
  • nucleus 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:plastid
iPSORT:mitochondrion
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:cytosol
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY09378 Canola cytosol 58.39 67.04
CDY63170 Canola cytosol 53.23 66.27
AT2G02240.1 Thale cress cytosol 65.81 63.75
AT2G02360.1 Thale cress nucleus 52.9 60.29
Bra026604.1-P Field mustard cytosol 60.97 58.7
AT2G02300.1 Thale cress cytosol 45.48 49.65
AT2G02340.1 Thale cress cytosol 48.71 49.51
AT2G02310.1 Thale cress cytosol 48.71 49.19
AT2G02350.2 Thale cress cytosol, mitochondrion 45.81 48.3
AT2G02320.1 Thale cress mitochondrion 43.87 44.3
VIT_00s0214g00130.t01 Wine grape cytosol 38.71 43.32
AT2G02230.1 Thale cress cytosol 46.77 43.15
Solyc04g050990.2.1 Tomato cytosol 41.29 43.1
PGSC0003DMT400031292 Potato cytosol 41.29 43.1
VIT_00s0214g00060.t01 Wine grape cytosol 39.68 42.86
AT5G24560.1 Thale cress cytosol 26.13 41.54
AT1G80110.1 Thale cress cytosol 34.19 41.25
KRG92586 Soybean cytosol, plastid 39.35 40.26
Solyc05g055870.2.1 Tomato cytosol 40.0 40.26
KRH68844 Soybean cytosol 40.32 39.43
PGSC0003DMT400060018 Potato cytosol 39.35 38.98
VIT_00s0214g00150.t01 Wine grape cytosol 38.39 38.89
VIT_00s0214g00040.t01 Wine grape cytosol, plastid 40.0 35.53
VIT_00s0214g00090.t01 Wine grape cytosol 38.39 35.31
AT1G56250.1 Thale cress cytosol 30.97 34.04
AT1G56240.1 Thale cress cytosol 30.97 33.8
AT1G09155.1 Thale cress cytosol 30.97 33.22
AT5G52120.1 Thale cress cytosol 24.52 26.12
AT3G53000.1 Thale cress cytosol 24.19 25.0
AT3G61060.2 Thale cress cytosol 20.97 22.34
AT1G63090.1 Thale cress cytosol 20.32 21.8
AT1G12710.2 Thale cress cytosol 20.97 19.52
Protein Annotations
Gene3D:1.20.1280.50MapMan:35.1EntrezGene:814756ProteinID:AAC78509.1ProteinID:AEC05561.1ArrayExpress:AT2G02250
EnsemblPlantsGene:AT2G02250RefSeq:AT2G02250TAIR:AT2G02250RefSeq:AT2G02250-TAIR-GEnsemblPlants:AT2G02250.1TAIR:AT2G02250.1
Symbol:AtPP2-B2InterPro:F-box-like_dom_sfInterPro:F-box_domGO:GO:0003674GO:GO:0005488GO:GO:0005515
GO:GO:0030246InterPro:IPR001810RefSeq:NP_178332.2PFAM:PF00646PFAM:PF14299PO:PO:0007616
PO:PO:0009029InterPro:PP2-likePFscan:PS50181PANTHER:PTHR32278PANTHER:PTHR32278:SF6UniProt:Q9ZVR5
SMART:SM00256SUPFAM:SSF81383UniParc:UPI00017390F8:::
Description
PP2B2Putative F-box protein PP2-B2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVR5]
Coordinates
chr2:-:594484..595869
Molecular Weight (calculated)
34931.5 Da
IEP (calculated)
8.261
GRAVY (calculated)
-0.408
Length
310 amino acids
Sequence
(BLAST)
001: MIQSTMGHKQ SVDSRGKGRK VPGSSSMVQK HRVESSGGAI ISGPSLFDNL PEDCISNIIS FTSPRDACVA ASVSKTFESA VNSDSVWDKF LPSDYSSLVP
101: PSRVFSSKKE LYFAICDNPV LVEDGGKSFW LEKENGKKCF MLSPKKSMWI TWVSTPQYWR WISIPEARFE EVPELLNVCW FEVRGGMNTK ELSPGTRYSA
201: YIVFKTKNGC PNLGDVPVEA TVGLVGQESS QRHIYFVGPS DQRRDRETRD VTRPTKRKDG WMEAELGQFF NESGCDVVDT SILEIKTPYW KRGLIIQGIE
301: FRPTKSLFYI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.