Subcellular Localization
min:
: max
Winner_takes_all: cytosol, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 2
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH68844 | Soybean | cytosol | 60.4 | 57.73 |
Solyc04g050990.2.1 | Tomato | cytosol | 53.14 | 54.21 |
PGSC0003DMT400031292 | Potato | cytosol | 53.14 | 54.21 |
KRH34201 | Soybean | nucleus | 46.86 | 53.99 |
Solyc05g055870.2.1 | Tomato | cytosol | 52.81 | 51.95 |
PGSC0003DMT400060018 | Potato | cytosol | 53.14 | 51.44 |
KRH15177 | Soybean | cytosol | 42.9 | 50.58 |
VIT_00s0214g00130.t01 | Wine grape | cytosol | 46.2 | 50.54 |
VIT_00s0214g00150.t01 | Wine grape | cytosol | 50.49 | 50.0 |
KRG92588 | Soybean | cytosol | 43.89 | 50.0 |
CDY24793 | Canola | cytosol | 23.43 | 48.97 |
AT5G24560.1 | Thale cress | cytosol | 30.69 | 47.69 |
VIT_00s0214g00060.t01 | Wine grape | cytosol | 44.55 | 47.04 |
AT2G02360.1 | Thale cress | nucleus | 41.58 | 46.32 |
CDY09378 | Canola | cytosol | 40.59 | 45.56 |
CDY17599 | Canola | cytosol | 42.24 | 45.23 |
KRH33867 | Soybean | cytosol | 39.27 | 45.08 |
KRH55670 | Soybean | cytosol | 14.52 | 44.9 |
CDY03056 | Canola | cytosol | 23.1 | 44.59 |
CDY63170 | Canola | cytosol | 36.63 | 44.58 |
Bra024822.1-P | Field mustard | cytosol | 32.01 | 44.5 |
CDX88110 | Canola | cytosol | 17.82 | 44.26 |
CDY65051 | Canola | cytosol | 32.67 | 43.81 |
CDY03057 | Canola | cytosol | 33.99 | 43.46 |
VIT_00s0214g00040.t01 | Wine grape | cytosol, plastid | 49.84 | 43.27 |
CDY09379 | Canola | cytosol | 35.31 | 43.15 |
KRH05841 | Soybean | cytosol, nucleus, peroxisome | 30.36 | 42.99 |
KRH68481 | Soybean | cytosol | 22.11 | 42.41 |
CDY17600 | Canola | cytosol | 39.93 | 42.31 |
Bra024823.1-P | Field mustard | cytosol | 39.93 | 42.31 |
CDY03058 | Canola | cytosol | 39.27 | 41.61 |
CDY17605 | Canola | cytosol | 40.26 | 41.5 |
CDY09383 | Canola | cytosol | 41.25 | 41.12 |
KRH68480 | Soybean | cytosol | 38.61 | 40.77 |
Bra026608.1-P | Field mustard | cytosol | 37.29 | 40.65 |
CDY09382 | Canola | cytosol | 35.64 | 40.6 |
CDY70803 | Canola | cytosol | 35.64 | 40.6 |
VIT_00s0214g00090.t01 | Wine grape | cytosol | 44.88 | 40.36 |
CDY15823 | Canola | cytosol | 43.89 | 40.06 |
CDY68805 | Canola | cytosol | 22.77 | 39.88 |
KRH55667 | Soybean | cytosol | 34.65 | 39.77 |
Bra026604.1-P | Field mustard | cytosol | 42.24 | 39.75 |
CDY09376 | Canola | cytosol | 25.41 | 39.69 |
AT2G02340.1 | Thale cress | cytosol | 39.93 | 39.67 |
Bra026609.1-P | Field mustard | cytosol | 43.56 | 39.52 |
KRG96762 | Soybean | cytosol | 37.29 | 39.37 |
AT2G02250.1 | Thale cress | cytosol | 40.26 | 39.35 |
KRH34196 | Soybean | cytosol | 38.61 | 39.26 |
Bra026603.1-P | Field mustard | cytosol | 37.62 | 39.18 |
AT2G02240.1 | Thale cress | cytosol | 41.25 | 39.06 |
CDY09375 | Canola | cytosol | 37.62 | 39.04 |
Bra024825.1-P | Field mustard | cytosol | 36.96 | 39.02 |
Bra024827.1-P | Field mustard | cytosol | 40.26 | 38.85 |
CDY17602 | Canola | cytosol | 39.27 | 38.14 |
CDY17601 | Canola | cytosol | 36.96 | 37.97 |
CDY03062 | Canola | cytosol | 39.93 | 37.93 |
KRH55669 | Soybean | cytosol | 33.0 | 37.88 |
AT2G02230.1 | Thale cress | cytosol | 41.58 | 37.5 |
AT2G02320.1 | Thale cress | mitochondrion | 37.62 | 37.13 |
AT2G02350.2 | Thale cress | cytosol, mitochondrion | 35.97 | 37.07 |
Bra026605.1-P | Field mustard | cytosol | 31.68 | 36.78 |
KRG92590 | Soybean | cytosol | 34.32 | 36.75 |
CDY09380 | Canola | cytosol | 38.28 | 36.59 |
CDY03060 | Canola | cytosol | 38.61 | 36.34 |
AT2G02300.1 | Thale cress | cytosol | 33.33 | 35.56 |
CDY03059 | Canola | cytosol | 38.94 | 35.44 |
Bra024824.1-P | Field mustard | cytosol | 39.27 | 35.31 |
AT2G02310.1 | Thale cress | cytosol | 33.33 | 32.9 |
CDX80451 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 23.43 | 32.87 |
Bra026606.1-P | Field mustard | plasma membrane, vacuole | 37.62 | 32.66 |
CDY65052 | Canola | cytosol | 37.29 | 26.16 |
KRH20009 | Soybean | cytosol, plastid | 25.41 | 25.84 |
KRH32630 | Soybean | cytosol, plastid | 25.41 | 25.67 |
KRH03980 | Soybean | cytosol, plastid | 23.76 | 25.17 |
KRH67813 | Soybean | cytosol | 24.42 | 25.08 |
KRH48244 | Soybean | cytosol | 22.77 | 24.56 |
KRH65151 | Soybean | cytosol | 22.11 | 23.84 |
KRH38594 | Soybean | cytosol | 22.11 | 23.18 |
KRG91447 | Soybean | cytosol, plastid | 22.11 | 22.87 |
KRH09123 | Soybean | cytosol | 21.45 | 22.49 |
KRH35368 | Soybean | cytosol | 21.78 | 22.15 |
KRH57251 | Soybean | plastid | 23.43 | 20.82 |
Protein Annotations
Gene3D:1.20.1280.50 | EntrezGene:100794456 | MapMan:35.1 | EMBL:ACUP02012763 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom |
EnsemblPlantsGene:GLYMA_20G220100 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001810 | UniProt:K7N4Z3 |
EnsemblPlants:KRG92586 | ProteinID:KRG92586 | ProteinID:KRG92586.1 | PFAM:PF00646 | PFAM:PF14299 | InterPro:PP2-like |
PFscan:PS50181 | PANTHER:PTHR32278 | PANTHER:PTHR32278:SF2 | SMART:SM00256 | SUPFAM:SSF81383 | UniParc:UPI000233DCB9 |
SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr20:-:45542222..45544336
Molecular Weight (calculated)
34567.3 Da
IEP (calculated)
6.543
GRAVY (calculated)
-0.319
Length
303 amino acids
Sequence
(BLAST)
(BLAST)
001: MTQSVVVDFN NLPEGCIANI LSFTSPRDVC RLSLLSSTFR SAAQSDAVWN KFLPSDFHTI LSQSSSLSLP SKKDLFLYLC QKPLLIDDGK KSFQLDKVYG
101: KKCYMLSARN LFIVWGDTPR YWRWTSLPDA RFSEVAELRS VCWLEIRGWI NTGMLSPETL YGAYLVFKPN PSGFYGFDYQ LVEVSIGIAG GENRKRNVFL
201: DAERGRRLRY QIVPRRAGTG IFNRARFLAP VEAPPVEDND SLDLQHPKER ADEWLEVELG EFFNDGQEDK ELEMGVYEIK SGDWKGGLLV QGIEIRPKRT
301: PIN
101: KKCYMLSARN LFIVWGDTPR YWRWTSLPDA RFSEVAELRS VCWLEIRGWI NTGMLSPETL YGAYLVFKPN PSGFYGFDYQ LVEVSIGIAG GENRKRNVFL
201: DAERGRRLRY QIVPRRAGTG IFNRARFLAP VEAPPVEDND SLDLQHPKER ADEWLEVELG EFFNDGQEDK ELEMGVYEIK SGDWKGGLLV QGIEIRPKRT
301: PIN
001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN
Arabidopsis Description
PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.