CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92588	Soybean	cytosol	64.64	63.91
KRH15177	Soybean	cytosol	60.46	61.87
KRH05841	Soybean	cytosol, nucleus, peroxisome	45.25	55.61
KRH34196	Soybean	cytosol	58.94	52.01
KRG92586	Soybean	cytosol, plastid	53.99	46.86
KRH33867	Soybean	cytosol	43.35	43.18
KRH68844	Soybean	cytosol	51.33	42.59
KRG92590	Soybean	cytosol	44.49	41.34
KRH55670	Soybean	cytosol	14.83	39.8
KRH55667	Soybean	cytosol	39.54	39.39
KRH68480	Soybean	cytosol	42.97	39.37
KRG96762	Soybean	cytosol	42.21	38.68
KRH55669	Soybean	cytosol	38.78	38.64
KRH68481	Soybean	cytosol	22.81	37.97
KRG91447	Soybean	cytosol, plastid	26.24	23.55
KRH20009	Soybean	cytosol, plastid	26.62	23.49
KRH32630	Soybean	cytosol, plastid	26.62	23.33
KRH09123	Soybean	cytosol	25.48	23.18
KRH03980	Soybean	cytosol, plastid	25.1	23.08
KRH67813	Soybean	cytosol	25.86	23.05
KRH38594	Soybean	cytosol	25.1	22.84
KRH48244	Soybean	cytosol	24.33	22.78
KRH35368	Soybean	cytosol	25.48	22.48
KRH65151	Soybean	cytosol	23.57	22.06
KRH57251	Soybean	plastid	25.48	19.65

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100800402	MapMan:35.1	UniProt:A0A0R0I1Y1	EMBL:ACUP02006583	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	EnsemblPlantsGene:GLYMA_10G169600	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
EnsemblPlants:KRH34201	ProteinID:KRH34201	ProteinID:KRH34201.1	PFAM:PF00646	PFAM:PF14299	InterPro:PP2-like
PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000189D89D

Description

hypothetical protein

Coordinates

chr10:+:40364491..40369741

Molecular Weight (calculated)

29770.5 Da

IEP (calculated)

5.770

GRAVY (calculated)

-0.344

Length

263 amino acids

Sequence
(BLAST)

001: MEFQGLPEGC IASILSRTTP ADVCRFSVVS KIFRSAAESD AVWKRFLPSD YHSIISQSPS PLNYPSKKEL YLALSDRPII IDQGKKSFQL EKKSGKKCYM
101: LAARALSIIW GDTEQYWNWT TDTNSRFPEV AELRDVCWLE IRGVLNTLVL SPNTQYAAYL VFKMIDARGF HNRPVELSVN VFGGHGSTKI VCLDPNEELP
201: HRRVEGLQRP NARSDGWLEI EMGEFFNTGL DDEVQMSVVE TKGGNWKSGL FIEGIEVKPK EEN

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.