Factsheet for VIT_00s0214g00090.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
endoplasmic reticulum 1
cytosol 3
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_16s0098g00600.t01
VIT_17s0000g06020.t01
VIT_18s0001g14860.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G02230.1	VIT_18s0001g14860.t01	AT5G42190.1	12795696
AT2G02300.1	VIT_17s0000g06020.t01	AT3G47620.1	21798944
AT2G02300.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT2G02360.1	VIT_18s0001g14860.t01	AT5G42190.1	14749489

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	64.99	62.75
VIT_00s0214g00130.t01	Wine grape	cytosol	46.88	57.04
VIT_00s0214g00060.t01	Wine grape	cytosol	47.18	55.4
VIT_00s0214g00150.t01	Wine grape	cytosol	49.85	54.9
Solyc04g050990.2.1	Tomato	cytosol	44.81	50.84
PGSC0003DMT400031292	Potato	cytosol	43.32	49.16
CDY24793	Canola	cytosol	19.88	46.21
Bra024822.1-P	Field mustard	cytosol	29.67	45.87
Solyc05g055870.2.1	Tomato	cytosol	41.84	45.78
PGSC0003DMT400060018	Potato	cytosol	42.14	45.37
CDY03056	Canola	cytosol	21.07	45.22
AT2G02360.1	Thale cress	nucleus	36.5	45.22
KRG92586	Soybean	cytosol, plastid	40.36	44.88
CDY17599	Canola	cytosol	37.69	44.88
CDY09376	Canola	cytosol	25.82	44.85
CDY03057	Canola	cytosol	31.16	44.3
VIT_14s0060g02020.t01	Wine grape	cytosol	37.09	43.86
KRH68844	Soybean	cytosol	41.25	43.85
VIT_14s0060g02000.t01	Wine grape	cytosol	37.39	43.75
CDY09378	Canola	cytosol	35.01	43.7
VIT_00s0214g00160.t01	Wine grape	cytosol	40.36	43.45
CDY63170	Canola	cytosol	32.05	43.37
CDY65051	Canola	cytosol	29.08	43.36
AT5G24560.1	Thale cress	cytosol	24.93	43.08
CDY70803	Canola	cytosol	33.53	42.48
CDY09382	Canola	cytosol	33.23	42.11
VIT_14s0060g01990.t01	Wine grape	cytosol	34.12	41.52
Bra026608.1-P	Field mustard	cytosol	32.94	39.93
CDY09379	Canola	cytosol	29.38	39.92
Bra024825.1-P	Field mustard	cytosol	33.83	39.72
Bra024823.1-P	Field mustard	cytosol	33.53	39.51
CDY17600	Canola	cytosol	33.53	39.51
CDY09383	Canola	cytosol	35.61	39.47
Bra026604.1-P	Field mustard	cytosol	37.69	39.44
CDX88110	Canola	cytosol	14.24	39.34
CDY03058	Canola	cytosol	33.23	39.16
AT2G02350.2	Thale cress	cytosol, mitochondrion	33.83	38.78
CDY68805	Canola	cytosol	19.88	38.73
CDY17602	Canola	cytosol	35.61	38.46
CDY17605	Canola	cytosol	33.53	38.44
AT2G02250.1	Thale cress	cytosol	35.31	38.39
AT2G02340.1	Thale cress	cytosol	34.72	38.36
CDY17601	Canola	cytosol	33.23	37.97
Bra026603.1-P	Field mustard	cytosol	32.34	37.46
AT2G02240.1	Thale cress	cytosol	35.31	37.19
CDY09375	Canola	cytosol	32.05	36.99
CDY03060	Canola	cytosol	35.31	36.96
Bra024827.1-P	Field mustard	cytosol	34.42	36.94
CDY15823	Canola	cytosol	36.2	36.75
CDY03062	Canola	cytosol	34.72	36.68
AT2G02230.1	Thale cress	cytosol	36.5	36.61
Bra026609.1-P	Field mustard	cytosol	36.2	36.53
VIT_05s0051g00080.t01	Wine grape	cytosol	28.49	36.36
CDY03059	Canola	cytosol	35.31	35.74
CDY09380	Canola	cytosol	33.53	35.65
AT2G02300.1	Thale cress	cytosol	29.67	35.21
Bra024824.1-P	Field mustard	cytosol	34.42	34.42
AT2G02310.1	Thale cress	cytosol	31.16	34.2
AT2G02320.1	Thale cress	mitochondrion	30.27	33.22
Bra026605.1-P	Field mustard	cytosol	25.52	32.95
Bra026606.1-P	Field mustard	plasma membrane, vacuole	32.94	31.81
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	16.91	26.39
CDY65052	Canola	cytosol	32.64	25.46
VIT_16s0100g00520.t01	Wine grape	cytosol	20.18	24.37
VIT_15s0048g01930.t01	Wine grape	cytosol	19.88	23.18
VIT_08s0007g04190.t01	Wine grape	cytosol	20.47	23.08
VIT_02s0025g04380.t01	Wine grape	cytosol	20.18	22.01

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100245523	wikigene:100245523	MapMan:35.1	ProteinID:CCB60976	ProteinID:CCB60976.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I209	EMBL:FN596523	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100245523	wikigene:LOC100245523	PFAM:PF14299	InterPro:PP2-like
PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	SUPFAM:SSF81383	TIGR:TC56935	UniParc:UPI00015CD987
ArrayExpress:VIT_00s0214g00090	EnsemblPlantsGene:VIT_00s0214g00090	EnsemblPlants:VIT_00s0214g00090.t01	unigene:Vvi.2938	RefSeq:XP_002270482	RefSeq:XP_002270482.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:13372259..13375717

Molecular Weight (calculated)

38395.7 Da

IEP (calculated)

4.309

GRAVY (calculated)

-0.500

Length

337 amino acids

Sequence
(BLAST)

001: MESKYPESDA RTVFSALPEG AIVDILKLTT PRDACRLSAV ASVFSSAAES DSLWESFLPP DYLEIVSRSS ESPSRRDFST KKELFFSLCD SPLLIDGGRR
101: GFWLEKQSGK KCYMLAAREL SITWGDTPEY WTWTSIPESR FSEVAFLNEV CWFEVKGKID TDMLSLRTKY AAYLVFDRRD SYGFENVEVK SSVGIIGSEA
201: TENIIYLDKD ASEEEDTEDE LVSIQNVRSW INDTLTQLYS SQEPDKELVS FEDVRTWMNK NIFQLHSSHE PQEPGVSTKG DGPYPNMRKD AWVEIELGEF
301: FNEGGGNKEL EIAIKQFDGH WKQGLIIEGI EIRPKND

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.