Factsheet for VIT_00s0214g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 3
plasma membrane 1
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0214g00130.t01	Wine grape	cytosol	45.69	51.62
Solyc04g050990.2.1	Tomato	cytosol	47.6	50.17
PGSC0003DMT400031292	Potato	cytosol	47.28	49.83
Solyc05g055870.2.1	Tomato	cytosol	47.6	48.38
PGSC0003DMT400060018	Potato	cytosol	48.24	48.24
VIT_00s0214g00150.t01	Wine grape	cytosol	46.33	47.39
VIT_00s0214g00060.t01	Wine grape	cytosol	43.13	47.04
VIT_14s0060g01990.t01	Wine grape	cytosol	39.62	44.77
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	49.84	44.7
VIT_14s0060g02020.t01	Wine grape	cytosol	40.26	44.21
VIT_14s0060g02000.t01	Wine grape	cytosol	38.66	42.01
VIT_00s0214g00090.t01	Wine grape	cytosol	43.45	40.36
VIT_05s0051g00080.t01	Wine grape	cytosol	32.91	39.02
VIT_16s0100g00520.t01	Wine grape	cytosol	21.09	23.66
VIT_15s0048g01930.t01	Wine grape	cytosol	20.77	22.49
VIT_08s0007g04190.t01	Wine grape	cytosol	21.09	22.07
VIT_02s0025g04380.t01	Wine grape	cytosol	19.81	20.06

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100241941	wikigene:100241941	MapMan:35.1	ProteinID:CCB60979	ProteinID:CCB60979.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	UniProt:F6I212	EMBL:FN596523	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001810	EntrezGene:LOC100241941	wikigene:LOC100241941	PFAM:PF00646	PFAM:PF14299
InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR32278	PANTHER:PTHR32278:SF2	SUPFAM:SSF81383	UniParc:UPI0002109993
ArrayExpress:VIT_00s0214g00160	EnsemblPlantsGene:VIT_00s0214g00160	EnsemblPlants:VIT_00s0214g00160.t01	RefSeq:XP_002270412	RefSeq:XP_002270412.1	SEG:seg

Description

No Description!

Coordinates

chrUn:+:13420910..13423379

Molecular Weight (calculated)

35233.2 Da

IEP (calculated)

5.983

GRAVY (calculated)

-0.320

Length

313 amino acids

Sequence
(BLAST)

001: MEEQKDCSEI RSEQMEESTG KSRFTSLPLE CVTEIISRTS PPDASRMSVV STDLRFAADS DAVWEGFLPK DFQSIIAGAA GSSRAEVQSK KELYLRLSDE
101: PILIEGGLKS FSIEKRSGKK CYMIAARALT IEWGDTPMYW KWISLPQSRF KEVAELISVC WFEIRGRINT CLLCLKTNYA AYLVFNSTTE TYGFEYHPVE
201: VSIGIIGGRI STQSVYLNPS KTQTRRFPVV PRRIGRFNRG LTQLMGLQAS VPAGGNCQHP KKREDGWLEI ELGEFFNEGG DEELEMSVLE VKAGNWKCGL
301: IIQGIEIRPK DRA

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.