CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra026603.1-P	Field mustard	cytosol	98.97	99.31
CDY68805	Canola	cytosol	58.56	98.84
CDY17599	Canola	cytosol	56.16	57.95
CDY03057	Canola	cytosol	46.23	56.96
CDY03056	Canola	cytosol	30.14	56.05
CDY09378	Canola	cytosol	51.37	55.56
CDY63170	Canola	cytosol	45.55	53.41
CDY09379	Canola	cytosol	44.86	52.82
CDY65051	Canola	cytosol	40.75	52.65
CDY09382	Canola	cytosol	47.95	52.63
CDY03058	Canola	cytosol	51.37	52.45
CDY17600	Canola	cytosol	51.03	52.1
CDY70803	Canola	cytosol	46.92	51.5
CDY17605	Canola	cytosol	47.26	46.94
CDY09380	Canola	cytosol	49.32	45.43
CDY17601	Canola	cytosol	45.21	44.75
CDY09383	Canola	cytosol	46.23	44.41
CDY17602	Canola	cytosol	46.92	43.91
CDY03062	Canola	cytosol	47.95	43.89
CDY09376	Canola	cytosol	29.11	43.81
CDY24793	Canola	cytosol	21.58	43.45
CDY03060	Canola	cytosol	46.58	42.24
VIT_00s0214g00130.t01	Wine grape	cytosol	39.73	41.88
CDY62670	Canola	cytosol	4.11	41.38
CDY15823	Canola	cytosol	46.92	41.27
CDY03059	Canola	cytosol	46.23	40.54
VIT_00s0214g00150.t01	Wine grape	cytosol	40.07	38.24
VIT_00s0214g00060.t01	Wine grape	cytosol	37.33	37.98
KRG92586	Soybean	cytosol, plastid	39.04	37.62
Solyc04g050990.2.1	Tomato	cytosol	38.01	37.37
Solyc05g055870.2.1	Tomato	cytosol	39.04	37.01
PGSC0003DMT400031292	Potato	cytosol	37.33	36.7
PGSC0003DMT400060018	Potato	cytosol	39.04	36.42
CDX87293	Canola	cytosol	31.51	35.94
CDY39994	Canola	cytosol	31.51	35.94
KRH68844	Soybean	cytosol	38.36	35.33
CDY31110	Canola	plastid	31.51	34.07
CDY72024	Canola	plastid	31.51	33.82
CDX88110	Canola	cytosol	14.04	33.61
CDX95006	Canola	cytosol	31.85	33.45
CDY71953	Canola	cytosol	31.51	33.09
VIT_00s0214g00040.t01	Wine grape	cytosol, plastid	39.38	32.95
CDY65052	Canola	cytosol	48.63	32.87
VIT_00s0214g00090.t01	Wine grape	cytosol	36.99	32.05
CDY38992	Canola	cytosol	30.48	31.45
CDY54100	Canola	cytosol	30.48	31.45
CDX80451	Canola	cytosol, endoplasmic reticulum, plasma membrane	21.58	29.17
CDY57080	Canola	cytosol	23.29	24.11
CDY38901	Canola	cytosol	22.6	23.74
CDX98047	Canola	cytosol	23.29	23.69
CDY32595	Canola	cytosol	23.29	23.53
CDY63226	Canola	plastid	22.26	22.41
CDY45973	Canola	cytosol	21.92	22.07
CDY42484	Canola	cytosol	21.23	21.75
CDY47354	Canola	cytosol	21.58	21.72
CDX73584	Canola	cytosol	21.58	21.72
CDX89095	Canola	cytosol	21.23	21.68
CDX78140	Canola	cytosol	22.26	21.59
CDY49201	Canola	cytosol	21.23	21.38
CDX79690	Canola	cytosol	20.21	20.07
CDX84551	Canola	cytosol	19.86	19.73
CDY16361	Canola	extracellular	12.33	18.75
CDX95004	Canola	peroxisome, plasma membrane, vacuole	18.84	17.03

Protein Annotations

EnsemblPlants:CDY09375	EnsemblPlantsGene:GSBRNA2T00030848001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF6
PFAM:PF00646	PFAM:PF14299	ProteinID:CDY09375	ProteinID:CDY09375.1	SEG:seg	SMART:SM00256
SUPFAM:SSF81383	UniParc:UPI0004EDFD18	UniProt:A0A078F4F4	MapMan:35.1	:	:

Description

BnaA02g26350DBnaA02g26350D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F4F4]

Coordinates

chrLK031995:+:346724..348076

Molecular Weight (calculated)

33579.9 Da

IEP (calculated)

6.367

GRAVY (calculated)

-0.361

Length

292 amino acids

Sequence
(BLAST)

001: MMSETHSVES SGEGGGEINV SDWSPFDTLT EDCISNIVSF TSPRDACVFT SVSKTFKSAV KSDIIWEKFL PLEYPSMIPP SLASSSKMEI YFYLCNDPVL
101: IEDGKKCVWL ENTSGKRCIM LSAESLYIKW INDTHCWDWI TSPGSRFERV AKVNDVCWFE IRGTINTHEL SPRTHYSSYI VFKEGFTDLP IEARVGVVGK
201: QASKRFFCFD VSTDGQFLKR GRRTWYFEKP KEREDGWREI ELGRFFNKRG LMNSDEFEMS AIATELRHWK SGFILQGIEI RPATIQRPRT VG

Best Arabidopsis Sequence Match ( AT2G02360.1 )
(BLAST)

001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL

Arabidopsis Description

PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.