Factsheet for GSMUA_Achr6P17110_001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 1
mitochondrion 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04190.t01	Wine grape	cytosol	75.68	74.92
KRH32630	Soybean	cytosol, plastid	72.97	72.0
KRH67813	Soybean	cytosol	71.62	71.86
KRH20009	Soybean	cytosol, plastid	72.3	71.81
AT3G53000.1	Thale cress	cytosol	67.91	67.0
CDX73584	Canola	cytosol	65.54	66.9
CDX79690	Canola	cytosol	65.88	66.33
Bra023077.1-P	Field mustard	cytosol	65.54	65.99
Bra006966.1-P	Field mustard	cytosol	66.89	65.78
CDX84551	Canola	cytosol	65.2	65.65
CDX78140	Canola	cytosol	66.55	65.45
PGSC0003DMT400072413	Potato	cytosol	64.53	65.41
PGSC0003DMT400028899	Potato	cytosol	64.86	65.31
PGSC0003DMT400006947	Potato	cytosol	65.2	64.55
Solyc10g085490.1.1	Tomato	cytosol	64.86	64.21
Solyc10g083730.1.1	Tomato	cytosol	64.53	63.88
Solyc09g008820.2.1	Tomato	cytosol	63.85	63.21
GSMUA_Achr11P...	Banana	cytosol	56.08	58.04
GSMUA_Achr4P27200_001	Banana	cytosol	54.73	56.45
GSMUA_Achr1P03900_001	Banana	cytosol	55.41	56.16
GSMUA_Achr5P03300_001	Banana	cytosol	54.39	55.33
GSMUA_Achr4P24870_001	Banana	cytosol	56.08	54.79
GSMUA_Achr7P05860_001	Banana	cytosol	53.38	54.48
GSMUA_Achr3P12400_001	Banana	cytosol	52.7	54.17
GSMUA_Achr11P...	Banana	cytosol	31.42	51.38
GSMUA_Achr1P20450_001	Banana	plastid	25.34	29.07
GSMUA_Achr1P05750_001	Banana	cytosol	26.69	28.62
GSMUA_Achr6P36620_001	Banana	cytosol	24.32	27.8
GSMUA_Achr8P03670_001	Banana	nucleus	26.01	26.92
GSMUA_Achr5P10170_001	Banana	cytosol	14.53	26.88
GSMUA_Achr1P05730_001	Banana	cytosol	23.65	26.22
GSMUA_Achr9P02770_001	Banana	nucleus	23.99	24.91
GSMUA_Achr1P05720_001	Banana	cytosol	23.31	24.56

Protein Annotations

EnsemblPlants:GSMUA_Achr6P17110_001	EnsemblPlants:GSMUA_Achr6T17110_001	EnsemblPlantsGene:GSMUA_Achr6G17110_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960
PANTHER:PTHR31960:SF7	PFAM:PF14299	PFscan:PS50181	SEG:seg	SMART:SM00256	SUPFAM:SSF81383
UniParc:UPI00029507C1	UniProt:M0T7Q9	MapMan:19.2.2.8.1.4.6	:	:	:

Description

F-box protein PP2-A15 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17110_001]

Coordinates

chr6:-:11515323..11519191

Molecular Weight (calculated)

32875.3 Da

IEP (calculated)

7.394

GRAVY (calculated)

-0.218

Length

296 amino acids

Sequence
(BLAST)

001: MGASLSNLTE AGSDGSGGPG LGDIPESCVA CVFTYLTPPE ICNLARLNRA FRGAASSDSV WEPKLPSTYP QLLSLLPPET VGHGSPLSKK KEIFAFLSRP
101: IPFDEGTKVL WLDRATGGVC LSVSAKGMTI TGIEDRRYWS WIPTEESRFQ VVAYLQQIWW FEVDGLIKFP FPAGVYSLSF RLHLGRFFKR LGRRLCNYGQ
201: THGWDIKPVR FELSTSDGQQ VSRECCLDEP EKDDMGNHKR GCWIDYHVGD FVVTSSDTVE LRFSMKQIDC THSKGGLCVD SISIIPSGLR HGKKSL

Best Arabidopsis Sequence Match ( AT3G53000.1 )
(BLAST)

001: MGSSLSNLND GTNGLAMGPG LGDIPESCVA CVFMYLTPPE ICNLAGLNRS FRGAASSDSV WEKKLPENYQ DLLDLLPPER YHSLSKKDIF AVLSRPIPFD
101: DDNKEVWIDR VTGRVCMAIS ARGMSITGIE DRRYWNWIPT EESRFHVVAY LQQIWWFEVD GTVRFHLPPG VYSLSFRIHL GRFTKRLGRR VCHFELTHGW
201: DLKPVRFSLS TSDGQEASCE YYLDDVERNE ALGKHKRGYW IEYRVGEFIV NGSEPSTEIQ WSMKQIDCTH SKGGLCVDSV FINPIGDVKE HKRKAVLKEA

Arabidopsis Description

PP2A15F-box protein PP2-A15 [Source:UniProtKB/Swiss-Prot;Acc:Q9LF92]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.