Factsheet for GSMUA_Achr4P27200_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P03300_001	Banana	cytosol	83.62	82.47
GSMUA_Achr11P...	Banana	cytosol	72.47	72.73
GSMUA_Achr1P03900_001	Banana	cytosol	73.52	72.26
GSMUA_Achr4P24870_001	Banana	cytosol	72.82	68.98
HORVU2Hr1G094960.4	Barley	cytosol	46.34	67.17
GSMUA_Achr11P...	Banana	cytosol	41.81	66.3
TraesCS2A01G400100.1	Wheat	cytosol	64.46	62.08
Os02t0675800-01	Rice	cytosol	64.11	61.95
TraesCS2D01G397700.1	Wheat	cytosol	64.11	61.74
Os04t0571300-01	Rice	cytosol, mitochondrion, peroxisome	65.16	61.51
VIT_02s0025g04380.t01	Wine grape	cytosol	65.51	60.84
TraesCS6A01G256100.1	Wheat	cytosol	63.07	60.74
TraesCS6D01G237300.1	Wheat	cytosol	63.07	60.74
GSMUA_Achr7P05860_001	Banana	cytosol	61.32	60.69
GSMUA_Achr3P12400_001	Banana	cytosol	60.63	60.42
TraesCS6B01G269300.1	Wheat	cytosol	62.72	60.4
TraesCS2B01G418200.2	Wheat	cytosol	63.76	60.4
VIT_15s0048g01930.t01	Wine grape	cytosol	60.63	60.21
VIT_16s0100g00520.t01	Wine grape	cytosol	58.19	59.86
KRH03980	Soybean	cytosol, plastid	59.23	59.44
Solyc08g080360.2.1	Tomato	plastid	59.58	59.17
Solyc12g056410.1.1	Tomato	cytosol, plastid	59.23	58.82
PGSC0003DMT400010881	Potato	plastid	59.23	58.82
PGSC0003DMT400058590	Potato	plastid	59.23	58.82
KXG31015	Sorghum	cytosol	61.67	58.8
EES11284	Sorghum	cytosol	63.76	58.47
Zm00001d051447_P002	Maize	cytosol	60.28	58.45
KRH65151	Soybean	cytosol	56.79	58.01
KRH48244	Soybean	cytosol	56.79	58.01
CDY42484	Canola	cytosol	56.79	57.19
CDY57080	Canola	cytosol	55.75	56.74
CDX89095	Canola	cytosol	56.45	56.64
AT3G61060.2	Thale cress	cytosol	57.14	56.36
Bra014456.1-P	Field mustard	cytosol	56.1	56.29
Bra019781.1-P	Field mustard	cytosol	56.1	56.1
CDX98047	Canola	cytosol	55.75	55.75
CDY16361	Canola	extracellular	37.28	55.73
Solyc10g017960.1.1	Tomato	cytosol	56.45	55.48
HORVU4Hr1G086110.1	Barley	cytosol	29.27	55.26
GSMUA_Achr6P17110_001	Banana	cytosol, nucleus, peroxisome	56.45	54.73
KRG91447	Soybean	cytosol, plastid	55.75	54.61
Solyc03g026160.2.1	Tomato	cytosol, extracellular	28.92	54.61
Os10t0522400-01	Rice	cytosol	31.36	54.55
Zm00001d021854_P001	Maize	cytosol	16.72	54.55
KRH35368	Soybean	cytosol	56.45	54.36
Solyc01g091700.2.1	Tomato	cytosol	54.36	54.36
PGSC0003DMT400026564	Potato	cytosol	55.75	54.24
PGSC0003DMT400071397	Potato	cytosol	54.36	54.17
Bra027000.1-P	Field mustard	cytosol	54.7	54.14
CDY47354	Canola	cytosol	54.7	54.14
Bra027618.1-P	Field mustard	cytosol	54.36	53.79
CDY45973	Canola	cytosol	54.36	53.79
CDY49201	Canola	cytosol	54.36	53.79
CDY63226	Canola	plastid	54.36	53.79
KRH38594	Soybean	cytosol	53.31	52.94
AT1G63090.1	Thale cress	cytosol	52.96	52.6
KRH09123	Soybean	cytosol	52.96	52.6
Zm00001d026078_P001	Maize	cytosol	52.61	52.25
PGSC0003DMT400037131	Potato	cytosol	53.31	51.69
CDY38901	Canola	cytosol	48.78	50.36
CDY32595	Canola	cytosol	50.52	50.17
KRH57251	Soybean	plastid	59.58	50.15
AT5G52120.1	Thale cress	cytosol	50.52	49.83
Bra029137.1-P	Field mustard	cytosol	49.48	48.97
AT1G12710.2	Thale cress	cytosol	55.05	47.45
GSMUA_Achr1P20450_001	Banana	plastid	25.78	28.68
GSMUA_Achr1P05750_001	Banana	cytosol	27.53	28.62
GSMUA_Achr6P36620_001	Banana	cytosol	25.09	27.8
GSMUA_Achr5P10170_001	Banana	cytosol	14.98	26.88
GSMUA_Achr1P05730_001	Banana	cytosol	23.69	25.47
GSMUA_Achr8P03670_001	Banana	nucleus	24.39	24.48
GSMUA_Achr9P02770_001	Banana	nucleus	24.04	24.21
GSMUA_Achr1P05720_001	Banana	cytosol	23.0	23.49

Protein Annotations

EnsemblPlants:GSMUA_Achr4P27200_001	EnsemblPlants:GSMUA_Achr4T27200_001	EnsemblPlantsGene:GSMUA_Achr4G27200_001	Gene3D:1.20.1280.50	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	InterPro:IPR001810	InterPro:PP2-like	PANTHER:PTHR31960
PFAM:PF14299	PFscan:PS50181	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI000296B8E0	UniProt:M0SSI2
MapMan:19.2.2.8.1.4.6	:	:	:	:	:

Description

F-box protein PP2-A13 [Source:GMGC_GENE;Acc:GSMUA_Achr4G27200_001]

Coordinates

chr4:+:26138231..26140461

Molecular Weight (calculated)

32363.8 Da

IEP (calculated)

8.599

GRAVY (calculated)

-0.251

Length

287 amino acids

Sequence
(BLAST)

001: MGSWISSIVR PEEEAGGLGD LPESCVAEVL LYLDPLEICR AARLSRAFRG AASADFVWET KLPKNYEYLM GLASGERRPG KETSLCKKEI YARLCRPNPF
101: DGGTKEFWLE KSSGGICLSI SSKALLITGI DDRRYWKYLP TDESRFGMVA YLQQVWWFEV NGGIDFCFPA GTYSLFVRLH LGRASKRFGH RICSSEHVHG
201: WDRKPVQFQL STSNGHRILS QCYLNKPGSW ILYHAGDFVV DNCNAPTTLR FSMTQIDCTH TKGGLCVDSV LIYPKGFRQR KVSSTSM

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.