Factsheet for Zm00001d021224_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER99217	Sorghum	cytosol	93.58	92.64
Os09t0525300-01	Rice	cytosol	77.36	81.49
TraesCS5D01G319500.1	Wheat	cytosol	78.38	80.84
TraesCS5B01G313700.1	Wheat	cytosol	77.7	79.86
TraesCS5A01G312700.1	Wheat	cytosol	77.36	79.79
HORVU5Hr1G080530.1	Barley	cytosol	76.35	78.75
Zm00001d024256_P001	Maize	cytosol, mitochondrion	61.15	72.69
Zm00001d035636_P001	Maize	plastid	59.8	67.82
GSMUA_Achr3P12400_001	Banana	cytosol	62.16	63.89
GSMUA_Achr7P05860_001	Banana	cytosol	62.5	63.79
GSMUA_Achr11P...	Banana	cytosol	37.5	61.33
VIT_15s0048g01930.t01	Wine grape	cytosol	56.76	58.13
VIT_16s0100g00520.t01	Wine grape	cytosol	54.05	57.35
Zm00001d027361_P001	Maize	cytosol	57.09	56.71
KRH03980	Soybean	cytosol, plastid	54.73	56.64
CDX89095	Canola	cytosol	54.05	55.94
CDY42484	Canola	cytosol	53.72	55.79
Bra014456.1-P	Field mustard	cytosol	53.72	55.59
Zm00001d029673_P001	Maize	plasma membrane	55.41	55.41
Zm00001d051447_P002	Maize	cytosol	55.41	55.41
Solyc08g080360.2.1	Tomato	plastid	54.05	55.36
CDY57080	Canola	cytosol	52.7	55.32
PGSC0003DMT400058590	Potato	plastid	53.72	55.02
AT3G61060.2	Thale cress	cytosol	53.72	54.64
Solyc10g017960.1.1	Tomato	cytosol	53.72	54.45
KRH48244	Soybean	cytosol	51.69	54.45
KRH65151	Soybean	cytosol	51.69	54.45
CDY16361	Canola	extracellular	35.14	54.17
Bra019781.1-P	Field mustard	cytosol	52.36	54.01
Solyc12g056410.1.1	Tomato	cytosol, plastid	52.7	53.98
CDX98047	Canola	cytosol	52.03	53.66
PGSC0003DMT400010881	Potato	plastid	52.36	53.63
VIT_02s0025g04380.t01	Wine grape	cytosol	55.74	53.4
PGSC0003DMT400026564	Potato	cytosol	53.04	53.22
Solyc01g091700.2.1	Tomato	cytosol	51.01	52.61
KRH38594	Soybean	cytosol	51.01	52.25
KRH09123	Soybean	cytosol	51.01	52.25
KRG91447	Soybean	cytosol, plastid	51.69	52.22
PGSC0003DMT400071397	Potato	cytosol	50.68	52.08
Bra027618.1-P	Field mustard	cytosol	50.34	51.38
CDY49201	Canola	cytosol	50.34	51.38
CDY47354	Canola	cytosol	50.34	51.38
KRH35368	Soybean	cytosol	51.69	51.34
AT1G63090.1	Thale cress	cytosol	50.0	51.21
CDY63226	Canola	plastid	50.0	51.03
CDY45973	Canola	cytosol	50.0	51.03
Bra027000.1-P	Field mustard	cytosol	50.0	51.03
Solyc03g026160.2.1	Tomato	cytosol, extracellular	26.01	50.66
CDY38901	Canola	cytosol	46.96	50.0
CDY32595	Canola	cytosol	47.97	49.13
Zm00001d026078_P001	Maize	cytosol	47.97	49.13
Zm00001d021854_P001	Maize	cytosol	14.53	48.86
PGSC0003DMT400037131	Potato	cytosol	48.65	48.65
Bra029137.1-P	Field mustard	cytosol	47.64	48.62
AT5G52120.1	Thale cress	cytosol	47.64	48.45
KRH57251	Soybean	plastid	55.07	47.8
AT1G12710.2	Thale cress	cytosol	52.36	46.55
Zm00001d018452_P001	Maize	cytosol, extracellular	23.99	23.51
Zm00001d051936_P001	Maize	cytosol	23.31	22.04
Zm00001d024621_P001	Maize	cytosol	22.3	21.5
Zm00001d053172_P001	Maize	cytosol	20.95	20.95
Zm00001d018451_P001	Maize	cytosol	23.99	20.64
Zm00001d032787_P001	Maize	cytosol	20.27	20.41

Protein Annotations

Gene3D:1.20.1280.50	EntrezGene:100193825	MapMan:19.2.2.8.1.4.6	UniProt:B4FGF4	EMBL:BT036192	EMBL:BT054948
EMBL:BT064273	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001810	ProteinID:ONM56564.1	PFAM:PF00646	PFAM:PF14299	InterPro:PP2-like	PFscan:PS50181
PANTHER:PTHR31960	PANTHER:PTHR31960:SF9	SMART:SM00256	SUPFAM:SSF81383	UniParc:UPI00017B73B8	EnsemblPlantsGene:Zm00001d021224
EnsemblPlants:Zm00001d021224_P001	EnsemblPlants:Zm00001d021224_T001	SEG:seg	:	:	:

Description

F-box protein PP2-A13

Coordinates

chr7:-:146508204..146510684

Molecular Weight (calculated)

32951.4 Da

IEP (calculated)

9.379

GRAVY (calculated)

-0.289

Length

296 amino acids

Sequence
(BLAST)

001: MGAVASSAGG ARGGDGTVLG DLPENCVAEV LLRLDPLEIC RMARLSRTFR GAASGDGVWE SKLPRNYARL LAVAAAGDGE GGQAAASAPG AELLPKKELY
101: ARLCRRNRFD GGKKEFWLDK GGGGLCMSIS SRALSITGID DRRYWNFIPS DESRFRTVAY LSQIWWFEVR GEVEFFFPEG TYSLFYRIHL GRPFKRLGRR
201: VYSSEHVHGW DMKPVRFQMS TSDGQHVQSK CYLSDPGIWI NHHVGDFVVK DSSRPVNIRF AMIQIDCTHT KGGLCVDSVV VKPQHLSQKK APWTYV

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.