Factsheet for Zm00001d029673_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
golgi 4
plasma membrane 5
endoplasmic reticulum 4
vacuole 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, secretory
iPSORT:	secretory
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94629	Sorghum	plasma membrane	95.61	94.02
HORVU1Hr1G048690.1	Barley	peroxisome	49.66	86.47
HORVU1Hr1G048700.4	Barley	cytosol, nucleus, plasma membrane	81.42	79.8
TraesCS1D01G187700.1	Wheat	cytosol, plasma membrane	80.41	79.33
TraesCS1B01G196400.1	Wheat	cytosol, plasma membrane	80.41	79.33
TraesCS1A01G188700.1	Wheat	plasma membrane	79.73	77.63
Zm00001d027361_P001	Maize	cytosol	72.3	71.81
VIT_16s0100g00520.t01	Wine grape	cytosol	57.43	60.93
PGSC0003DMT400058590	Potato	plastid	58.11	59.52
VIT_15s0048g01930.t01	Wine grape	cytosol	58.11	59.52
Solyc08g080360.2.1	Tomato	plastid	57.77	59.17
Zm00001d051447_P002	Maize	cytosol	58.78	58.78
AT3G61060.2	Thale cress	cytosol	57.43	58.42
KRH03980	Soybean	cytosol, plastid	56.42	58.39
CDX89095	Canola	cytosol	55.74	57.69
Bra014456.1-P	Field mustard	cytosol	55.74	57.69
KRH65151	Soybean	cytosol	54.73	57.65
PGSC0003DMT400010881	Potato	plastid	56.08	57.44
KRH48244	Soybean	cytosol	54.39	57.3
CDY42484	Canola	cytosol	55.07	57.19
KRG91447	Soybean	cytosol, plastid	56.08	56.66
Solyc12g056410.1.1	Tomato	cytosol, plastid	55.07	56.4
VIT_02s0025g04380.t01	Wine grape	cytosol	58.78	56.31
CDY16361	Canola	extracellular	36.49	56.25
CDY57080	Canola	cytosol	53.38	56.03
KRH35368	Soybean	cytosol	56.08	55.7
Zm00001d021224_P001	Maize	cytosol	55.41	55.41
Bra019781.1-P	Field mustard	cytosol	53.72	55.4
CDX98047	Canola	cytosol	53.38	55.05
KRH09123	Soybean	cytosol	53.38	54.67
Solyc03g026160.2.1	Tomato	cytosol, extracellular	27.7	53.95
Bra027000.1-P	Field mustard	cytosol	52.7	53.79
CDY63226	Canola	plastid	52.36	53.45
CDY45973	Canola	cytosol	52.36	53.45
AT1G63090.1	Thale cress	cytosol	52.03	53.29
KRH38594	Soybean	cytosol	52.03	53.29
CDY47354	Canola	cytosol	52.03	53.1
Bra027618.1-P	Field mustard	cytosol	51.69	52.76
CDY49201	Canola	cytosol	51.69	52.76
Zm00001d026078_P001	Maize	cytosol	50.68	51.9
CDY38901	Canola	cytosol	48.65	51.8
Solyc10g017960.1.1	Tomato	cytosol	51.01	51.71
CDY32595	Canola	cytosol	49.66	50.87
PGSC0003DMT400071397	Potato	cytosol	49.32	50.69
Solyc01g091700.2.1	Tomato	cytosol	48.99	50.52
AT5G52120.1	Thale cress	cytosol	49.66	50.52
PGSC0003DMT400037131	Potato	cytosol	50.0	50.0
Bra029137.1-P	Field mustard	cytosol	48.99	50.0
PGSC0003DMT400026564	Potato	cytosol	49.32	49.49
KRH57251	Soybean	plastid	56.42	48.97
HORVU5Hr1G055050.1	Barley	mitochondrion	28.04	48.82
HORVU2Hr1G049730.1	Barley	cytosol	28.04	48.82
Zm00001d021854_P001	Maize	cytosol	14.19	47.73
AT1G12710.2	Thale cress	cytosol	52.7	46.85
Os02t0224900-01	Rice	endoplasmic reticulum, extracellular	36.49	45.57
Zm00001d024256_P001	Maize	cytosol, mitochondrion	36.82	43.78
Zm00001d035636_P001	Maize	plastid	36.49	41.38
Zm00001d018452_P001	Maize	cytosol, extracellular	24.32	23.84
Zm00001d024621_P001	Maize	cytosol	22.3	21.5
Zm00001d051936_P001	Maize	cytosol	22.64	21.41
Zm00001d018451_P001	Maize	cytosol	23.99	20.64
Zm00001d053172_P001	Maize	cytosol	20.61	20.61
Zm00001d032787_P001	Maize	cytosol	20.27	20.41

Protein Annotations

Gene3D:1.20.1280.50	MapMan:19.2.2.8.1.4.6	UniProt:B7ZYR0	EMBL:BT054452	InterPro:F-box-like_dom_sf	InterPro:F-box_dom
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	ProteinID:ONL99345.1	PFAM:PF14299
InterPro:PP2-like	PFscan:PS50181	PANTHER:PTHR31960	PANTHER:PTHR31960:SF10	SUPFAM:SSF81383	SignalP:SignalP-noTM
UniParc:UPI00019173CE	EnsemblPlantsGene:Zm00001d029673	EnsemblPlants:Zm00001d029673_P001	EnsemblPlants:Zm00001d029673_T001	SEG:seg	:

Description

F-box protein PP2-A13

Coordinates

chr1:+:82101246..82103796

Molecular Weight (calculated)

33469.4 Da

IEP (calculated)

9.176

GRAVY (calculated)

-0.285

Length

296 amino acids

Sequence
(BLAST)

001: MGAWVSVLLG MDGAAAAGPA AVGLGDLPEL CAAQVLLRLD PPEICRLAQV NHAFRGAAGA DFVWEAKLPE NYNYLMEFVG SGDEGKRRRR RAGKKEIYAR
101: LARPVPFGDG KKEFWLDKNK GMICMALSSK ALVITGIDDR RYWQHMPTSE SRFQSVAYLQ QIWWFEVVGE VDFCFPVGTY SLYFRVHLGK FYRRFGRRQC
201: TSEHVHGWDK KPVRFQLSTS DGQQALSQCY LEEPGSWVLY HAGDFVASKP DQLMKLKFSM AQIDCTHTKG GLCIDSVLIY PKGKGFHQER VVRSQK

Best Arabidopsis Sequence Match ( AT3G61060.1 )
(BLAST)

001: MGANISGGSP EFDRNDDVYS RKLRLVDLPE NCVALIMTRL DPPEICRLAR LNRMFRRASS ADFIWESKLP ANYRVIAHKV FDEITLTKLI KKDLYAKLSQ
101: PNLFDDGTKE LWIDKNTGRL CLSISSKALR ITGIDDRRYW SHIPTDESRF QSAAYVQQIW WFEVGGEFEI QFPSGTYSLF FRIQLGKTSK RLGRRICNSE
201: HIHGWDIKPV RFQLATSDNQ QAVSLCYLNN NPGSWSHYHV GDFKVTNPDV STGIKFSMTQ IDCTHTKGGL CIDSVLILPK ECAKEVIGSQ

Arabidopsis Description

AtPP2-A13Phloem protein 2-A13 [Source:UniProtKB/TrEMBL;Acc:F4JD33]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.