Factsheet for Zm00001d024256_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

mitochondrion 4
cytosol 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035636_P001	Maize	plastid	81.53	77.78
Zm00001d021224_P001	Maize	cytosol	72.69	61.15
EER99217	Sorghum	cytosol	71.89	59.87
GSMUA_Achr11P...	Banana	cytosol	39.36	54.14
TraesCS5D01G319500.1	Wheat	cytosol	60.24	52.26
TraesCS5A01G312700.1	Wheat	cytosol	59.84	51.92
Os09t0525300-01	Rice	cytosol	58.23	51.6
HORVU5Hr1G080530.1	Barley	cytosol	59.44	51.57
TraesCS5B01G313700.1	Wheat	cytosol	59.44	51.39
Zm00001d021854_P001	Maize	cytosol	16.06	45.45
GSMUA_Achr7P05860_001	Banana	cytosol	46.99	40.34
GSMUA_Achr3P12400_001	Banana	cytosol	45.38	39.24
VIT_15s0048g01930.t01	Wine grape	cytosol	44.98	38.75
VIT_16s0100g00520.t01	Wine grape	cytosol	42.57	37.99
KRH03980	Soybean	cytosol, plastid	42.97	37.41
KRH48244	Soybean	cytosol	42.17	37.37
Zm00001d051447_P002	Maize	cytosol	44.18	37.16
CDX89095	Canola	cytosol	42.57	37.06
CDY42484	Canola	cytosol	42.17	36.84
Zm00001d029673_P001	Maize	plasma membrane	43.78	36.82
Bra014456.1-P	Field mustard	cytosol	42.17	36.71
KRH65151	Soybean	cytosol	41.37	36.65
Solyc08g080360.2.1	Tomato	plastid	42.17	36.33
AT3G61060.2	Thale cress	cytosol	42.17	36.08
PGSC0003DMT400058590	Potato	plastid	41.77	35.99
Zm00001d027361_P001	Maize	cytosol	42.97	35.91
CDY57080	Canola	cytosol	40.56	35.82
Solyc12g056410.1.1	Tomato	cytosol, plastid	41.37	35.64
PGSC0003DMT400010881	Potato	plastid	41.37	35.64
Bra019781.1-P	Field mustard	cytosol	40.16	34.84
CDX98047	Canola	cytosol	40.16	34.84
CDY49201	Canola	cytosol	40.56	34.83
CDY47354	Canola	cytosol	40.56	34.83
Bra027618.1-P	Field mustard	cytosol	40.56	34.83
PGSC0003DMT400071397	Potato	cytosol	40.16	34.72
VIT_02s0025g04380.t01	Wine grape	cytosol	42.97	34.63
Solyc01g091700.2.1	Tomato	cytosol	39.76	34.49
Bra027000.1-P	Field mustard	cytosol	40.16	34.48
CDY45973	Canola	cytosol	40.16	34.48
KRH38594	Soybean	cytosol	39.76	34.26
KRH09123	Soybean	cytosol	39.76	34.26
CDY63226	Canola	plastid	39.76	34.14
KRG91447	Soybean	cytosol, plastid	39.36	33.45
PGSC0003DMT400026564	Potato	cytosol	39.36	33.22
Solyc10g017960.1.1	Tomato	cytosol	38.96	33.22
Zm00001d026078_P001	Maize	cytosol	38.55	33.22
KRH35368	Soybean	cytosol	39.36	32.89
AT1G63090.1	Thale cress	cytosol	38.15	32.87
KRH57251	Soybean	plastid	44.98	32.84
PGSC0003DMT400037131	Potato	cytosol	37.35	31.42
CDY38901	Canola	cytosol	34.94	31.3
AT1G12710.2	Thale cress	cytosol	40.56	30.33
CDY16361	Canola	extracellular	23.29	30.21
CDY32595	Canola	cytosol	34.94	30.1
Bra029137.1-P	Field mustard	cytosol	34.94	30.0
AT5G52120.1	Thale cress	cytosol	34.94	29.9
Solyc03g026160.2.1	Tomato	cytosol, extracellular	12.45	20.39
Zm00001d018452_P001	Maize	cytosol, extracellular	21.69	17.88
Zm00001d024621_P001	Maize	cytosol	21.69	17.59
Zm00001d032787_P001	Maize	cytosol	20.48	17.35
Zm00001d051936_P001	Maize	cytosol	20.08	15.97
Zm00001d053172_P001	Maize	cytosol	18.07	15.2
Zm00001d018451_P001	Maize	cytosol	19.28	13.95

Protein Annotations

EnsemblPlants:Zm00001d024256_P001	EnsemblPlants:Zm00001d024256_T001	EnsemblPlantsGene:Zm00001d024256	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:F-box-like_dom_sf	InterPro:PP2-like	PANTHER:PTHR31960	PANTHER:PTHR31960:SF9	PFAM:PF14299	PFscan:PS51257
ProteinID:AQK40908.1	SUPFAM:SSF81383	UniParc:UPI00084403D0	UniProt:A0A1D6IYE5	MapMan:35.1	:

Description

F-box protein PP2-A13

Coordinates

chr10:-:59897138..59898746

Molecular Weight (calculated)

28330.8 Da

IEP (calculated)

8.747

GRAVY (calculated)

-0.404

Length

249 amino acids

Sequence
(BLAST)

001: MFFSRFRFKF QVLHGGGVAC CESMPNLIER PSPIDFCVPR DRGGDGTVLG DLLENCVTEV LLRLDPLEIC QMARLSRMFR GATSGDGVWE SKLLTNYARL
101: LAVAEAGDGE AGQATGSAPE AEPLPKKELY ARLCRRNRFD GGKKEFWLDK GGGGLCMSIS SRALSITGID DRRYWNFIPS DESRFRTVAY LSQIWWFEVR
201: GEVEFFFPKS TYNLFYRIHL GRPFKRNQRS SGRDHQVAHR CPWANTHSQ

Best Arabidopsis Sequence Match ( AT1G12710.1 )
(BLAST)

001: MGVAHSDLHN DLSSSSCFGD RNILKPGLGD LPEACVAIIV ENLDPVEICR FSKLNRAFRG ASWADCVWES KLPQNYRDVL EKILGGFPEN LQKRHLYAFL
101: SRINSFDDAT KKVWIDKRTS GVCLSISAKG LSITGIDDRR YWSHIPTDES RFSSVAYLQQ IWWFEVDGEI DFPFPVGTYS IFFRLQLGRS GKWFGRRVCN
201: TEQVHGWDIK PVRFQLWTED GQYSSSQCML TERGNWIHYH AGDVVVRESN RSSTKIKFSM TQIDCTHTKG GLSLDSVVVY PSSCKDQLKR F

Arabidopsis Description

AtPP2-A12phloem protein 2-A12 [Source:TAIR;Acc:AT1G12710]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.