Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, plastid
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G368900.1 | Wheat | cytosol | 73.53 | 81.43 |
| TraesCS6B01G423200.1 | Wheat | cytosol | 72.06 | 81.13 |
| TraesCS6A01G383900.1 | Wheat | cytosol | 73.24 | 79.05 |
| TraesCS6D01G369000.1 | Wheat | cytosol | 72.06 | 78.27 |
| TraesCS6B01G423400.1 | Wheat | cytosol | 71.76 | 77.71 |
| HORVU6Hr1G090000.1 | Barley | cytosol, plastid | 71.76 | 72.19 |
| Os02t0813350-01 | Rice | cytosol | 56.76 | 64.98 |
| EES05998 | Sorghum | cytosol | 52.65 | 64.39 |
| HORVU2Hr1G104500.6 | Barley | cytosol | 49.12 | 63.74 |
| EES05996 | Sorghum | cytosol | 48.82 | 59.5 |
| HORVU7Hr1G012610.1 | Barley | cytosol | 50.88 | 58.64 |
| Zm00001d018452_P001 | Maize | cytosol, extracellular | 51.47 | 57.95 |
| OQU85929 | Sorghum | cytosol | 46.47 | 55.44 |
| Os02t0813166-00 | Rice | cytosol, plastid | 41.47 | 53.82 |
| OQU85933 | Sorghum | cytosol, mitochondrion | 39.71 | 52.53 |
| Os02t0813083-00 | Rice | extracellular | 16.47 | 49.12 |
| CDY39994 | Canola | cytosol | 33.53 | 44.53 |
| Bra035198.1-P | Field mustard | cytosol | 33.24 | 44.14 |
| CDX87293 | Canola | cytosol | 33.24 | 44.14 |
| AT1G80110.1 | Thale cress | cytosol | 33.24 | 43.97 |
| HORVU5Hr1G124090.2 | Barley | cytosol | 39.12 | 43.89 |
| VIT_14s0060g01990.t01 | Wine grape | cytosol | 34.71 | 42.6 |
| GSMUA_Achr5P10170_001 | Banana | cytosol | 20.0 | 42.5 |
| VIT_14s0060g02020.t01 | Wine grape | cytosol | 35.59 | 42.46 |
| VIT_14s0060g02000.t01 | Wine grape | cytosol | 35.0 | 41.32 |
| KRH33867 | Soybean | cytosol | 31.47 | 40.53 |
| PGSC0003DMT400063740 | Potato | cytosol | 34.12 | 40.42 |
| HORVU6Hr1G089430.1 | Barley | cytosol, plastid | 37.35 | 40.06 |
| Solyc01g099990.2.1 | Tomato | cytosol | 33.24 | 38.97 |
| HORVU7Hr1G072570.3 | Barley | cytosol | 31.47 | 36.39 |
| KRH68480 | Soybean | cytosol | 30.59 | 36.24 |
| HORVU3Hr1G014270.1 | Barley | cytosol | 33.24 | 36.22 |
| Solyc01g100010.2.1 | Tomato | cytosol | 29.12 | 35.61 |
| PGSC0003DMT400063744 | Potato | cytosol | 29.41 | 35.46 |
| Solyc01g100000.2.1 | Tomato | cytosol | 28.24 | 35.42 |
| KRG96762 | Soybean | cytosol | 29.71 | 35.19 |
| HORVU0Hr1G021610.3 | Barley | cytosol | 33.53 | 35.08 |
| KRH68481 | Soybean | cytosol | 15.88 | 34.18 |
| HORVU6Hr1G089480.1 | Barley | cytosol, extracellular | 16.76 | 33.33 |
| HORVU4Hr1G086110.1 | Barley | cytosol | 12.35 | 27.63 |
| HORVU5Hr1G080530.1 | Barley | cytosol | 19.41 | 23.0 |
| HORVU1Hr1G048700.4 | Barley | cytosol, nucleus, plasma membrane | 20.0 | 22.52 |
| HORVU2Hr1G094960.4 | Barley | cytosol | 12.94 | 22.22 |
| HORVU1Hr1G048690.1 | Barley | peroxisome | 10.59 | 21.18 |
| HORVU2Hr1G049730.1 | Barley | cytosol | 10.0 | 20.0 |
| HORVU5Hr1G055050.1 | Barley | mitochondrion | 9.71 | 19.41 |
| HORVU4Hr1G040780.1 | Barley | mitochondrion, plastid | 6.47 | 17.6 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:35.1 | UniProt:A0A287V4L8 | InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:HORVU6Hr1G090010 | EnsemblPlants:HORVU6Hr1G090010.2 | InterPro:IPR001810 | PFAM:PF00646 |
| PFAM:PF14299 | InterPro:PP2-like | PFscan:PS50181 | PANTHER:PTHR32278 | PANTHER:PTHR32278:SF2 | SUPFAM:SSF81383 |
| UniParc:UPI000B469AE8 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:571141296..571144535
Molecular Weight (calculated)
37572.9 Da
IEP (calculated)
4.697
GRAVY (calculated)
-0.554
Length
340 amino acids
Sequence
(BLAST)
(BLAST)
001: QSFRVLGRHP EAARPIAHPT HSPPPPPNLE PSRRHRPNQA AAGRPTDGRR DRPMEEACEI ARLPEELVSA ALARTSPRDA CRAAAVSQAF RAAADSDDVW
101: AGFLPPGGLP PLADGEPPGP APPSSKKELF LRLSAGPALL QDRLVSVWLD RETGAKCYML SARNLFIVWG DTPEYWSWIP LEDSRFSEGA ELLDVCWLEI
201: HGKIHSKMLS QDTTYAAYLV FKMADNFYGL NFPVQEASVS SGATNLTRKV CIQAGHRDNN NYDSDDDDDD DDDEYDVYLK ENVTFPQKRV DGWLELELGE
301: FLSEGGDDGE VSISLTETKG GMWKSGLIVQ GIEIRRKKSG
101: AGFLPPGGLP PLADGEPPGP APPSSKKELF LRLSAGPALL QDRLVSVWLD RETGAKCYML SARNLFIVWG DTPEYWSWIP LEDSRFSEGA ELLDVCWLEI
201: HGKIHSKMLS QDTTYAAYLV FKMADNFYGL NFPVQEASVS SGATNLTRKV CIQAGHRDNN NYDSDDDDDD DDDEYDVYLK ENVTFPQKRV DGWLELELGE
301: FLSEGGDDGE VSISLTETKG GMWKSGLIVQ GIEIRRKKSG
001: MGRKRRVKSE SSPFDSFPED CISYIISFTN PRDACVAATV SKTFESTVKS DIIWEKFLPA DYESLIPPSR VFSSKKELYF SLCNDPVLFD DDKKSVWLEK
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
101: ASGKRCLMLS AMNLSIIWGD NPQYWQWIPI PESRFEKVAK LRDVCWFEIR GRTNTRVLSP RTRYSAYIVF KGVDKCYGFQ NVAIEAAVGV VGQEPSRRLI
201: CFSEAIRRGR RNVVKPKQRE DGWMEIELGE FFNDGGIMDN DEIEMSALET KQLNRKCGLI IQGIEIRPAK IL
Arabidopsis Description
PP2B10F-box protein PP2-B10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVQ6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.