CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU85929	Sorghum	cytosol	76.7	75.09
EES05998	Sorghum	cytosol	65.95	66.19
TraesCS7A01G063600.1	Wheat	cytosol, nucleus, peroxisome	55.2	58.78
TraesCS4B01G262300.1	Wheat	cytosol	54.48	57.58
TraesCS4D01G262300.1	Wheat	cytosol	54.48	57.36
HORVU2Hr1G104500.6	Barley	cytosol	53.76	57.25
TraesCS6D01G369200.1	Wheat	cytosol	59.14	55.93
TraesCS6D01G369100.1	Wheat	cytosol	59.5	55.89
OQU85933	Sorghum	cytosol, mitochondrion	51.25	55.64
TraesCS6A01G384000.2	Wheat	cytosol	59.14	55.56
TraesCS6B01G423500.1	Wheat	cytosol	59.14	55.56
TraesCS6B01G423200.1	Wheat	cytosol	59.14	54.64
TraesCS6A01G384100.1	Wheat	cytosol	57.71	54.21
TraesCS7D01G058100.1	Wheat	cytosol	50.54	53.82
Os02t0813350-01	Rice	cytosol	56.99	53.54
TraesCS6B01G423400.1	Wheat	cytosol	59.14	52.55
TraesCS6D01G368900.1	Wheat	cytosol	57.71	52.44
TraesCS6D01G369000.1	Wheat	cytosol	58.78	52.4
TraesCS6A01G383900.1	Wheat	cytosol	59.14	52.38
Os02t0813166-00	Rice	cytosol, plastid	47.67	50.76
HORVU7Hr1G012610.1	Barley	cytosol	53.05	50.17
KXG31332	Sorghum	cytosol	54.48	49.84
HORVU6Hr1G090000.1	Barley	cytosol, plastid	59.86	49.41
KXG28410	Sorghum	cytosol	47.67	49.26
HORVU6Hr1G090010.2	Barley	cytosol, nucleus, plastid	59.5	48.82
TraesCS4A01G041300.1	Wheat	plastid	54.84	47.81
TraesCSU01G190600.1	Wheat	cytosol, mitochondrion	54.84	47.81
TraesCSU01G197600.1	Wheat	cytosol, mitochondrion	54.84	47.81
KXG31333	Sorghum	cytosol	51.97	47.7
TraesCS7A01G063200.1	Wheat	cytosol	18.28	47.22
TraesCS5D01G035000.1	Wheat	cytosol, mitochondrion	54.12	44.94
Os02t0813083-00	Rice	extracellular	17.92	43.86
TraesCS4A01G320400.1	Wheat	cytosol	40.14	43.75
TraesCS5B01G558600.1	Wheat	cytosol	40.14	40.88
AT1G80110.1	Thale cress	cytosol	37.63	40.86
Bra035198.1-P	Field mustard	cytosol	37.28	40.62
CDX87293	Canola	cytosol	37.28	40.62
GSMUA_Achr5P10170_001	Banana	cytosol	23.3	40.62
CDY39994	Canola	cytosol	36.56	39.84
HORVU5Hr1G124090.2	Barley	cytosol	43.01	39.6
VIT_14s0060g01990.t01	Wine grape	cytosol	37.63	37.91
KRH33867	Soybean	cytosol	35.84	37.88
EES05994	Sorghum	cytosol	45.52	37.57
VIT_14s0060g02020.t01	Wine grape	cytosol	37.28	36.49
KRH68480	Soybean	cytosol	36.92	35.89
VIT_14s0060g02000.t01	Wine grape	cytosol	36.92	35.76
PGSC0003DMT400063740	Potato	cytosol	36.56	35.54
Solyc01g099990.2.1	Tomato	cytosol	36.2	34.83
KRG96762	Soybean	cytosol	35.48	34.49
PGSC0003DMT400063744	Potato	cytosol	34.05	33.69
KRH68481	Soybean	cytosol	18.64	32.91
Solyc01g100010.2.1	Tomato	cytosol	32.62	32.73
Solyc01g100000.2.1	Tomato	cytosol	31.54	32.47
OQU92610	Sorghum	mitochondrion	34.77	26.01
EER95641	Sorghum	cytosol	26.52	25.17
EER99217	Sorghum	cytosol	26.52	24.75
EER94629	Sorghum	plasma membrane	26.16	24.25
OQU85932	Sorghum	mitochondrion	46.95	23.35
KXG31015	Sorghum	cytosol	23.66	21.93
EES11284	Sorghum	cytosol	24.37	21.73

Protein Annotations

MapMan:35.1	EntrezGene:8056426	UniProt:C5XV92	EnsemblPlants:EES05996	ProteinID:EES05996	ProteinID:EES05996.1
InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810
PFAM:PF00646	PFAM:PF14299	InterPro:PP2-like	PANTHER:PTHR32278	PANTHER:PTHR32278:SF13	EnsemblPlantsGene:SORBI_3004G340700
SUPFAM:SSF81383	UniParc:UPI0001A85BEB	RefSeq:XP_002453020.1	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:67234844..67237079

Molecular Weight (calculated)

30667.4 Da

IEP (calculated)

5.040

GRAVY (calculated)

-0.219

Length

279 amino acids

Sequence
(BLAST)

001: MESTSPPAGC EIARLPDDLL SATLARTAPR DACRAATVSP AFRAAADADV VWSSFLPLDL PPLADGELPA DMLSKKQLFM RLSDPGSPVL LADGLTSMWL
101: DRATGAKCYM LSARKLGIAW GDTPQYWRWI PITVSRFSEA AELQYVWWLE IRGNIDSKML SQHTTYSAYT VFRVADGRRG LHFPCLETSV SLEGSSSRST
201: RRVCLDNGHD GANTWPSMRG DIPQDALFPR ERGDGWMEVE VGEFRSSEGD DGEVSIRLKE TSVAKSGLVV LGIEIRPKV

Best Arabidopsis Sequence Match ( AT2G02230.1 )
(BLAST)

001: MEQIHGGDSN SGGGGGGSSR NDEISVTRAS RFDALPEDCI SKVISHTSPR DACVVASVSK SVKSAAQSDL VWEMFLPSEY SSLVLQSANH LSKKEIFLSL
101: ADNSVLVENG KKSFWVEKAS GKKCYMLSAM ELTIIWGDSP AYWKWITVPE SKFEKVAELR NVCWFEVRGK ISCGMLSKGT HYSVYVVFKT ANGRSYGFDL
201: VPVEAGVGFV GKVATKKSVY FESGNADSRS ATSHYSGISY AMVSRAFRMR RPWMQVQREE EEEVEGERER GMNVVGPKER VDGWSEVELG KFYINNGGCG
301: DDGSDEIEIS IMETQNGNWK SGLIIQGIEI RPERSN

Arabidopsis Description

PP2B1F-box protein PP2-B1 [Source:UniProtKB/Swiss-Prot;Acc:Q6NPT8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.