Factsheet for PGSC0003DMT400026695

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g066470.2.1	Tomato	cytosol	95.1	95.1
Bra027530.1-P	Field mustard	cytosol	75.17	77.62
VIT_07s0005g03680.t01	Wine grape	plastid	77.97	76.63
CDY36977	Canola	cytosol	75.52	76.33
CDY13124	Canola	cytosol	75.17	75.97
AT5G44110.1	Thale cress	cytosol	74.83	75.89
AT1G03905.1	Thale cress	cytosol	75.87	74.83
KRH19580	Soybean	cytosol	77.27	74.66
Bra030549.1-P	Field mustard	cytosol	75.52	74.23
CDY15481	Canola	cytosol	75.17	74.14
CDX86663	Canola	cytosol	75.17	73.88
TraesCS6A01G377900.1	Wheat	cytosol	75.17	73.88
HORVU6Hr1G088850.1	Barley	cytosol	74.83	73.54
TraesCS6B01G415600.1	Wheat	cytosol	74.83	73.54
EES07729	Sorghum	cytosol	74.83	72.54
TraesCS6D01G362400.1	Wheat	cytosol	72.03	60.95
GSMUA_Achr7P16770_001	Banana	cytosol, extracellular, plasma membrane	54.2	52.9
PGSC0003DMT400007215	Potato	cytosol	51.75	44.98

Protein Annotations

EntrezGene:102594788	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887
InterPro:IPR003439	UniProt:M1ANL1	InterPro:P-loop_NTPase	PFAM:PF00005	EnsemblPlantsGene:PGSC0003DMG400010314	PGSC:PGSC0003DMG400010314
EnsemblPlants:PGSC0003DMT400026695	PFscan:PS50893	PANTHER:PTHR12847	PANTHER:PTHR12847:SF6	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI00029515D9	RefSeq:XP_006351662.1	SEG:seg	:	:	:

Description

ABC transporter family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010314]

Coordinates

chr9:-:49992434..49996438

Molecular Weight (calculated)

32145.7 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.198

Length

286 amino acids

Sequence
(BLAST)

001: MEGESSSIQV NGMQFSYDFQ SPIYFDFNLN IAPRSRCLLL GANGSGKTTL LKILAGKHMV GGKDVVRVLN FSAFHDTHLV CSGDLAYLGE SWSKNVGAVG
101: EIPLQGDFSA EHMIFGVEGV DPVRREKLIE LLDIDLQWRM HKVSDGQRRR VQICMGLLHP YKVLLLDEVT VDLDVVARMD LLDFFKEECE QRGATIVYAT
201: HIFDGLETWA TDLVYIQEGV LKRTEKLPEL PELKSSPNLL SVVENWLRSE TPIEKKKPAP SPPKAQKSSP FGSSPFQSSR HMAYFR

Best Arabidopsis Sequence Match ( AT1G03905.1 )
(BLAST)

001: MAEKDATASG DDAIRVSGMQ FAYEVEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLKIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TVGSAGEVPL QGDFSAEHMI FGVEGTDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQDGELNRL SKMTDIEELK TSPNLLSVVE SWLRSEIKLV KKKKKPVAPW KPSPFDNSPF RSSRHMAYYR

Arabidopsis Description

ABCI19ABC transporter I family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.