CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY15481	Canola	cytosol	97.94	98.28
AT1G03905.1	Thale cress	cytosol	91.75	92.07
CDY36977	Canola	cytosol	82.82	85.16
CDY13124	Canola	cytosol	82.82	85.16
VIT_07s0005g03680.t01	Wine grape	plastid	77.66	77.66
PGSC0003DMT400026695	Potato	cytosol	73.88	75.17
HORVU6Hr1G088850.1	Barley	cytosol	74.57	74.57
Solyc09g066470.2.1	Tomato	cytosol	72.51	73.78
TraesCS6B01G415600.1	Wheat	cytosol	73.54	73.54
TraesCS6A01G377900.1	Wheat	cytosol	73.2	73.2
EES07729	Sorghum	cytosol	73.54	72.54
KRH19580	Soybean	cytosol	73.54	72.3
TraesCS6D01G362400.1	Wheat	cytosol	69.76	60.06
CDX80812	Canola	mitochondrion	29.21	56.67
GSMUA_Achr7P16770_001	Banana	cytosol, extracellular, plasma membrane	54.3	53.92
CDX86661	Canola	extracellular	15.81	53.49
CDY10455	Canola	cytosol	52.92	47.53
CDY40345	Canola	cytosol	52.58	47.22
CDX80811	Canola	mitochondrion, nucleus, plastid	2.06	19.35
CDX86662	Canola	nucleus	14.09	12.97
CDX91492	Canola	cytosol	1.37	7.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078DH53	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	EnsemblPlants:CDX86663
ProteinID:CDX86663	ProteinID:CDX86663.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00145331001	InterPro:IPR003439	InterPro:P-loop_NTPase
PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR12847	PANTHER:PTHR12847:SF6	SMART:SM00382	SUPFAM:SSF52540
UniParc:UPI0000D8969A	SEG:seg	:	:	:	:

Description

BnaC08g00400D

Coordinates

chrLK031846:-:1422800..1424612

Molecular Weight (calculated)

32555.1 Da

IEP (calculated)

6.719

GRAVY (calculated)

-0.220

Length

291 amino acids

Sequence
(BLAST)

001: MAAKDQATTS DDAIRVSGME FSYEAEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLKIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TIGSAGEVPL QGDFSAEHMI FGVEGIDPVR RDKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQNGELNRS SKMADISEMK TSPNLLSVVE SWLRSETKIY KKKKKEPVAA WKPTPFDNSP FRSSRHMAYY R

Best Arabidopsis Sequence Match ( AT1G03905.1 )
(BLAST)

001: MAEKDATASG DDAIRVSGMQ FAYEVEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLKIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TVGSAGEVPL QGDFSAEHMI FGVEGTDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQDGELNRL SKMTDIEELK TSPNLLSVVE SWLRSEIKLV KKKKKPVAPW KPSPFDNSPF RSSRHMAYYR

Arabidopsis Description

ABCI19ABC transporter I family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.