CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 3
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, extracellular, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY10455	Canola	cytosol	86.0	39.81
CDY40345	Canola	cytosol	86.0	39.81
CDX86661	Canola	extracellular	17.33	30.23
CDY15481	Canola	cytosol	57.33	29.66
CDY13124	Canola	cytosol	55.33	29.33
CDY36977	Canola	cytosol	55.33	29.33
CDX86663	Canola	cytosol	56.67	29.21
CDX80811	Canola	mitochondrion, nucleus, plastid	4.0	19.35
CDX91492	Canola	cytosol	3.33	9.62
CDX86662	Canola	nucleus	16.0	7.59

Protein Annotations

EnsemblPlants:CDX80812	EnsemblPlantsGene:GSBRNA2T00134200001	Gene3D:3.40.50.300	GO:A0A078CVN0	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	InterPro:ATPase_AAA_core	InterPro:P-loop_NTPase	PANTHER:PTHR12847	PANTHER:PTHR12847:SF6
PFAM:PF13304	ProteinID:CDX80812	ProteinID:CDX80812.1	SEG:seg	SUPFAM:SSF52540	UniParc:UPI0004EE8F98
MapMan:35.1	:	:	:	:	:

Description

BnaC03g00660D

Coordinates

chrLK031823:-:330830..331875

Molecular Weight (calculated)

17062.0 Da

IEP (calculated)

6.262

GRAVY (calculated)

0.124

Length

150 amino acids

Sequence
(BLAST)

001: MAAVMVISAA RFWRRDVAFA GFEVPIQMDI SAEKMIFGVL DIDISWRLHK VSDGQRRRVQ ICMGLLKPFK VLLLDEITVD LDVLARADLL TFLRKECQER
101: GATIIYATHI FDGLEDWPTH IVYVANGKLQ LAMPMEKVKG NKQEVVDENG

Best Arabidopsis Sequence Match ( AT1G03905.2 )
(BLAST)

001: MVGGKNVVQV LSRSAFHDTQ LVCSGDLSYL GGSWSKTVGS AGEVPLQGDF SAEHMIFGVE GTDPVRREKL IDLLDINLQW RMHKVSDGQK RRVQICMGLL
101: HPFKVLLLDE VTVDLDVVAR MDLLEFFKEE CDQRGATIVY ATHIFDGLET WATHLAYIQD GELNRLSKMT DIEELKTSPN LLSVVESWLR SEIKLVKKKK
201: KPVAPWKPSP FDNSPFRSSR HMAYYR

Arabidopsis Description

ABCI19ABC transporter I family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDJ0]
SUBAcon: [cytosol,plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.