CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG90492	Soybean	nucleus	5.06	20.0
CDY10455	Canola	cytosol	17.09	16.67
CDY40345	Canola	cytosol	17.09	16.67
KRG90493	Soybean	cytosol	10.44	16.02
CDX80812	Canola	mitochondrion	7.59	16.0
CDY15481	Canola	cytosol	12.97	14.14
CDX86663	Canola	cytosol	12.97	14.09
CDX91492	Canola	cytosol	2.22	13.46
CDY36977	Canola	cytosol	12.03	13.43
CDY13124	Canola	cytosol	11.71	13.07
CDX86661	Canola	extracellular	3.16	11.63
CDX80811	Canola	mitochondrion, nucleus, plastid	0.32	3.23

Protein Annotations

EnsemblPlants:CDX86662	EnsemblPlantsGene:GSBRNA2T00145330001	GO:A0A078DC99	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:IPR036879	InterPro:TF_MADSbox_sf	PANTHER:PTHR12847
PANTHER:PTHR12847:SF6	ProteinID:CDX86662	ProteinID:CDX86662.1	SUPFAM:SSF55455	UniParc:UPI0004EE09D4	MapMan:35.1

Description

BnaC08g00410D

Coordinates

chrLK031846:+:1417556..1421802

Molecular Weight (calculated)

36309.0 Da

IEP (calculated)

6.140

GRAVY (calculated)

-0.586

Length

316 amino acids

Sequence
(BLAST)

001: MNLLEFFEEE CDQRGATIVY ATHIFDVLET WATHLAYIQN GELNRSSKMA DINEKKTSPN LLSVVESWLC SETKLVKKKK EHVAPWKPSP FDNSPFRRLN
101: GRELEGITYA EIGILHHHIY KQTEQLRMKR NFEMQNAESL QSEFDRLWIL NERMHGRELE GMTSSDLASL HVKISCALVA LMDQTSGPRM EQMARQPQKF
201: LCHDNKDPIS RLAERQRCSS TPLQFDFFLF QESLEDSTTE RRAAKPDVEP IVNDANRDKS CALSRSYFTG QAETLHKRSG ASVAAIVVSE NEAQYRYSSA
301: SMHEVIALAE YQPMEP

Best Arabidopsis Sequence Match ( AT2G41440.2 )
(BLAST)

001: MRRGVLVPCK FSASSLGERQ EDPNGEAPLL QMQREFEQRS SESLQSEFDK LWLFNERMNG RELEGMTSFD LSILHIQILR ALRALIDQKL GPRQEHRAWQ
101: RGELVCHTDK ESVSGLAEPG RCSSDNDKDA DSSLQCRLLL VSRKLRRFHN SYQRKSMPET RSVCQSRVTS D

Arabidopsis Description

unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eu /.../es - 2996 (source: NCBI BLink). [Source:TAIR;Acc:AT2G41440]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.