CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra030549.1-P	Field mustard	cytosol	99.66	99.31
CDX86663	Canola	cytosol	98.28	97.94
AT1G03905.1	Thale cress	cytosol	92.07	92.07
CDY36977	Canola	cytosol	82.41	84.45
CDY13124	Canola	cytosol	82.41	84.45
VIT_07s0005g03680.t01	Wine grape	plastid	77.93	77.66
PGSC0003DMT400026695	Potato	cytosol	74.14	75.17
HORVU6Hr1G088850.1	Barley	cytosol	74.48	74.23
TraesCS6B01G415600.1	Wheat	cytosol	74.48	74.23
TraesCS6A01G377900.1	Wheat	cytosol	74.14	73.88
Solyc09g066470.2.1	Tomato	cytosol	72.76	73.78
EES07729	Sorghum	cytosol	73.79	72.54
KRH19580	Soybean	cytosol	73.45	71.96
TraesCS6D01G362400.1	Wheat	cytosol	70.69	60.65
CDX80812	Canola	mitochondrion	29.66	57.33
CDX86661	Canola	extracellular	16.21	54.65
GSMUA_Achr7P16770_001	Banana	cytosol, extracellular, plasma membrane	54.83	54.27
CDY10455	Canola	cytosol	52.41	46.91
CDY40345	Canola	cytosol	52.41	46.91
CDX80811	Canola	mitochondrion, nucleus, plastid	2.07	19.35
CDX86662	Canola	nucleus	14.14	12.97
CDX91492	Canola	cytosol	1.38	7.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078FQQ8	UniProt:A0A078FQQ8	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
EnsemblPlants:CDY15481	ProteinID:CDY15481	ProteinID:CDY15481.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	GO:GO:0016887	EnsemblPlantsGene:GSBRNA2T00089651001	InterPro:IPR003439
InterPro:P-loop_NTPase	PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR12847	PANTHER:PTHR12847:SF6	SMART:SM00382
SUPFAM:SSF52540	UniParc:UPI0004EF3B9A	SEG:seg	:	:	:

Description

BnaA08g27650DBnaA08g27650D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FQQ8]

Coordinates

chrLK032055:+:188828..190717

Molecular Weight (calculated)

32432.9 Da

IEP (calculated)

6.314

GRAVY (calculated)

-0.230

Length

290 amino acids

Sequence
(BLAST)

001: MAAKDQATTS DDAIRVSGME FSYEAEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLRIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TVGSAGEVPL QGDFSAEHMI FGVEGIDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQNGELNRS SKMADISEMK TSPNLLSVVE SWLRSETKID KKKKEPVPAW KPTPFDNSPF RSSRHMAYYR

Best Arabidopsis Sequence Match ( AT1G03905.1 )
(BLAST)

001: MAEKDATASG DDAIRVSGMQ FAYEVEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLKIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TVGSAGEVPL QGDFSAEHMI FGVEGTDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQDGELNRL SKMTDIEELK TSPNLLSVVE SWLRSEIKLV KKKKKPVAPW KPSPFDNSPF RSSRHMAYYR

Arabidopsis Description

ABCI19ABC transporter I family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.