Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030549.1-P | Field mustard | cytosol | 92.41 | 92.1 |
| CDY15481 | Canola | cytosol | 92.07 | 92.07 |
| CDX86663 | Canola | cytosol | 92.07 | 91.75 |
| AT5G44110.1 | Thale cress | cytosol | 82.07 | 84.4 |
| VIT_07s0005g03680.t01 | Wine grape | plastid | 77.93 | 77.66 |
| PGSC0003DMT400026695 | Potato | cytosol | 74.83 | 75.87 |
| HORVU6Hr1G088850.1 | Barley | cytosol | 75.52 | 75.26 |
| Solyc09g066470.2.1 | Tomato | cytosol | 73.79 | 74.83 |
| TraesCS6B01G415600.1 | Wheat | cytosol | 74.83 | 74.57 |
| TraesCS6A01G377900.1 | Wheat | cytosol | 74.48 | 74.23 |
| EES07729 | Sorghum | cytosol | 74.83 | 73.56 |
| KRH19580 | Soybean | cytosol | 74.83 | 73.31 |
| TraesCS6D01G362400.1 | Wheat | cytosol | 70.69 | 60.65 |
| GSMUA_Achr7P16770_001 | Banana | cytosol, extracellular, plasma membrane | 55.52 | 54.95 |
| AT5G02270.2 | Thale cress | cytosol | 52.41 | 42.94 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:839376 | UniProt:A0A178WBN4 | InterPro:AAA+_ATPase | ProteinID:AAD10694.1 |
| InterPro:ABC_transporter-like | ProteinID:AEE27631.1 | ArrayExpress:AT1G03905 | EnsemblPlantsGene:AT1G03905 | RefSeq:AT1G03905 | TAIR:AT1G03905 |
| RefSeq:AT1G03905-TAIR-G | EnsemblPlants:AT1G03905.1 | TAIR:AT1G03905.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0016787 | GO:GO:0016887 | InterPro:IPR003439 | RefSeq:NP_563694.1 | ProteinID:OAP14905.1 | InterPro:P-loop_NTPase |
| PFAM:PF00005 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009030 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 |
| PFscan:PS50893 | PANTHER:PTHR12847 | PANTHER:PTHR12847:SF6 | UniProt:Q3EDJ0 | SMART:SM00382 | SUPFAM:SSF52540 |
| UniParc:UPI0000162C3E | SEG:seg | : | : | : | : |
Description
ABCI19ABC transporter I family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDJ0]
Coordinates
chr1:+:993400..995989
Molecular Weight (calculated)
32423.1 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.182
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEKDATASG DDAIRVSGMQ FAYEVEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLKIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TVGSAGEVPL QGDFSAEHMI FGVEGTDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQDGELNRL SKMTDIEELK TSPNLLSVVE SWLRSEIKLV KKKKKPVAPW KPSPFDNSPF RSSRHMAYYR
101: TVGSAGEVPL QGDFSAEHMI FGVEGTDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQDGELNRL SKMTDIEELK TSPNLLSVVE SWLRSEIKLV KKKKKPVAPW KPSPFDNSPF RSSRHMAYYR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.