Factsheet for VIT_07s0005g03680.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400026695	Potato	cytosol	76.63	77.97
CDY15481	Canola	cytosol	77.66	77.93
AT1G03905.1	Thale cress	cytosol	77.66	77.93
CDX86663	Canola	cytosol	77.66	77.66
Bra030549.1-P	Field mustard	cytosol	77.32	77.32
Solyc09g066470.2.1	Tomato	cytosol	75.26	76.57
Bra027530.1-P	Field mustard	cytosol	72.85	76.53
AT5G44110.1	Thale cress	cytosol	73.54	75.89
CDY36977	Canola	cytosol	73.2	75.27
EES07729	Sorghum	cytosol	76.29	75.25
CDY13124	Canola	cytosol	72.85	74.91
HORVU6Hr1G088850.1	Barley	cytosol	74.23	74.23
TraesCS6B01G415600.1	Wheat	cytosol	74.23	74.23
KRH19580	Soybean	cytosol	75.26	73.99
TraesCS6A01G377900.1	Wheat	cytosol	73.88	73.88
TraesCS6D01G362400.1	Wheat	cytosol	70.1	60.35
GSMUA_Achr7P16770_001	Banana	cytosol, extracellular, plasma membrane	55.33	54.95
VIT_14s0060g00720.t01	Wine grape	cytosol	51.2	45.29

Protein Annotations

EntrezGene:100260023	wikigene:100260023	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like
EMBL:AM451714	ProteinID:CAN65408	ProteinID:CAN65408.1	ProteinID:CBI37138	ProteinID:CBI37138.3	UniProt:D7U321
EMBL:FN596502	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	GO:GO:0016887	InterPro:IPR003439	EntrezGene:LOC100260023	wikigene:LOC100260023	InterPro:P-loop_NTPase
PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR12847	PANTHER:PTHR12847:SF6	SMART:SM00382	SUPFAM:SSF52540
TIGR:TC55629	UniParc:UPI00015CAA53	ArrayExpress:VIT_07s0005g03680	EnsemblPlantsGene:VIT_07s0005g03680	EnsemblPlants:VIT_07s0005g03680.t01	unigene:Vvi.11660
RefSeq:XP_002276857	RefSeq:XP_002276857.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:6578139..6585629

Molecular Weight (calculated)

32457.9 Da

IEP (calculated)

6.309

GRAVY (calculated)

-0.188

Length

291 amino acids

Sequence
(BLAST)

001: MAIQSSSSSN SIKVNGLQFA YEGQPPLFLD FNLQISPGSR CLLVGANGSG KTTLLRILAG KHMVGGRDVV QVLNCSAFHD THLVCSGDLS YLGGSWSKNI
101: GSAGEVPLQG DFSAEHMIFG VEGINPVRRD KLVDLLDIDL QWRMHKVSDG QRRRVQICMG LLHPFQVLLL DEVTVDLDVV ARMDLLEFFK EECDQRGATI
201: VYATHIFDGL ETWATDLAYV QEGDLRKIEK LSELDELKTS ANLLSVVESW LRSETKCEKK KPINPPAQIQ RTPSPFDSSP FRSSRHMAYY R

Best Arabidopsis Sequence Match ( AT1G03905.1 )
(BLAST)

001: MAEKDATASG DDAIRVSGMQ FAYEVEDPIF FDFNLDLPAG SRCLLVGANG SGKTTLLKIL AGKHMVGGKN VVQVLSRSAF HDTQLVCSGD LSYLGGSWSK
101: TVGSAGEVPL QGDFSAEHMI FGVEGTDPVR REKLIDLLDI NLQWRMHKVS DGQKRRVQIC MGLLHPFKVL LLDEVTVDLD VVARMDLLEF FKEECDQRGA
201: TIVYATHIFD GLETWATHLA YIQDGELNRL SKMTDIEELK TSPNLLSVVE SWLRSEIKLV KKKKKPVAPW KPSPFDNSPF RSSRHMAYYR

Arabidopsis Description

ABCI19ABC transporter I family member 19 [Source:UniProtKB/Swiss-Prot;Acc:Q3EDJ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.