Factsheet for PGSC0003DMT400007215

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g100850.2.1	Tomato	cytosol	97.57	97.87
VIT_14s0060g00720.t01	Wine grape	cytosol	86.93	86.93
KRH33782	Soybean	cytosol	80.55	79.58
CDY10455	Canola	cytosol	77.2	78.4
CDY40345	Canola	cytosol	77.2	78.4
GSMUA_Achr3P08390_001	Banana	cytosol	79.64	78.21
Bra009601.1-P	Field mustard	cytosol	77.2	78.15
Os03t0316900-01	Rice	cytosol	74.77	76.88
TraesCS4D01G180700.1	Wheat	cytosol	72.64	76.85
TraesCS4A01G125500.1	Wheat	cytosol	72.64	76.85
TraesCS4B01G179200.2	Wheat	cytosol	72.04	76.21
EER94951	Sorghum	cytosol	74.77	76.16
AT5G02270.2	Thale cress	cytosol	79.64	74.01
Zm00001d047583_P001	Maize	cytoskeleton, cytosol, nucleus	75.08	70.37
Bra005714.1-P	Field mustard	cytosol	61.4	67.11
HORVU4Hr1G052430.1	Barley	plastid	73.25	59.95
PGSC0003DMT400026695	Potato	cytosol	44.98	51.75

Protein Annotations

EntrezGene:102589975	Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009628
GO:GO:0016787	GO:GO:0016887	GO:GO:0080167	InterPro:IPR003439	UniProt:M0ZSN6	InterPro:P-loop_NTPase
PFAM:PF00005	EnsemblPlantsGene:PGSC0003DMG400002789	PGSC:PGSC0003DMG400002789	EnsemblPlants:PGSC0003DMT400007215	PFscan:PS50893	PANTHER:PTHR12847
PANTHER:PTHR12847:SF6	SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002954315	RefSeq:XP_006344794.1	SEG:seg

Description

ABC transporter family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400002789]

Coordinates

chr1:+:78453921..78457254

Molecular Weight (calculated)

36886.8 Da

IEP (calculated)

9.318

GRAVY (calculated)

-0.362

Length

329 amino acids

Sequence
(BLAST)

001: MAVKEDKKPS VEINNLKFTY PGIDGHPPPG STPLIDDFNL TLYPGDRCLL VGSNGAGKTT ILKILGGKHM VEPDMVRVLG RSAFHDTALT ASGDLSYLGG
101: EWRREVAFAG FEVPIQMDVS AEKMIFGVPG TDPQRRDELI KVLGIDLSWR MHRSSDGQRR RVQICMGLLK PFKVLLLDEI TVDLDVLARS DLLKFLIKEC
201: EERGATIIYA THIFDGLENW PSHLIYVAHG KLQLAMPMDK VKQISNLSLM RTVERWLRKE RDEERKRRKE RKAKGLPEYE KQVEGTRVVG GDPGRAAGRP
301: LNNGWAGGTL HSTIAGEENF FLSSNRVLR

Best Arabidopsis Sequence Match ( AT5G02270.1 )
(BLAST)

001: MAVTEEEKKR NSTVEISGLR FTYPGIDGHP PPGSKPLIED FSITLNSSDR CLLVGSNGAG KTTILKILGG KHMVEPHMVR VLGRSAFHDT GLTSSGDLCY
101: LGGEWRRDVA FAGFEVPIQM DISAEKMIFG VAGIDPQRRD ELIKVLDIDI SWRLHKVSDG QRRRVQICMG LLKPFKVLLL DEITVDLDVL ARADLLKFLR
201: KECEERGATI IYATHIFDGL EDWPTHIVYV ANGKLQLALP MEKVKETSKK SLMRTVESWL RKERDEERKR RKERKANGLP EFETRTEESR VTGDPARMLN
301: NGWAAGRLHS TVAGGEDNFV LSSNRVLR

Arabidopsis Description

ATNAP9Non-intrinsic ABC protein 9 [Source:UniProtKB/TrEMBL;Acc:F4KCB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.