Factsheet for GSMUA_Achr3P08390_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_14s0060g00720.t01	Wine grape	cytosol	80.6	82.07
Os03t0316900-01	Rice	cytosol	78.21	81.88
TraesCS4D01G180700.1	Wheat	cytosol	75.22	81.03
TraesCS4A01G125500.1	Wheat	cytosol	75.22	81.03
EER94951	Sorghum	cytosol	77.91	80.81
TraesCS4B01G179200.2	Wheat	cytosol	74.63	80.39
Solyc01g100850.2.1	Tomato	cytosol	78.21	79.88
PGSC0003DMT400007215	Potato	cytosol	78.21	79.64
KRH33782	Soybean	cytosol	78.21	78.68
CDY10455	Canola	cytosol	74.03	76.54
CDY40345	Canola	cytosol	74.03	76.54
Bra009601.1-P	Field mustard	cytosol	74.03	76.31
Zm00001d047583_P001	Maize	cytoskeleton, cytosol, nucleus	77.91	74.36
AT5G02270.2	Thale cress	cytosol	77.61	73.45
Bra005714.1-P	Field mustard	cytosol	59.4	66.11
HORVU4Hr1G052430.1	Barley	plastid	76.12	63.43
GSMUA_Achr7P16770_001	Banana	cytosol, extracellular, plasma membrane	34.93	39.93

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	InterPro:AAA+_ATPase	InterPro:ABC_transporter-like	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0005524	GO:GO:0008150	GO:GO:0009628	GO:GO:0016787
GO:GO:0016887	GO:GO:0080167	EnsemblPlantsGene:GSMUA_Achr3G08390_001	EnsemblPlants:GSMUA_Achr3P08390_001	EnsemblPlants:GSMUA_Achr3T08390_001	InterPro:IPR003439
UniProt:M0SCV6	InterPro:P-loop_NTPase	PFAM:PF00005	PFscan:PS50893	PANTHER:PTHR12847	PANTHER:PTHR12847:SF6
SMART:SM00382	SUPFAM:SSF52540	UniParc:UPI0002952283	SEG:seg	:	:

Description

ABC transporter I family member 20 [Source:GMGC_GENE;Acc:GSMUA_Achr3G08390_001]

Coordinates

chr3:+:5961623..5965515

Molecular Weight (calculated)

37156.8 Da

IEP (calculated)

8.115

GRAVY (calculated)

-0.272

Length

335 amino acids

Sequence
(BLAST)

001: MGNEGTATSA ADVGPVVEVK NLRFTYPGID GHPPPGSAPL IDGFSLSLRA GDRCLLVGTN GAGKTTILKI LGGKHMVDPE MVRILGRSAF HDTALTSSGD
101: LSYLGGEWRR DVAFAGFGVS IQMDISAEKM IYGVSGVDPQ RRDELINVLD IDLSWRMHKA SDGQRRRIQI CMGLLKPFKV LLLDEITVDL DVLARANLLR
201: YLSKECEERG ATIIYATHIF DGLEDWPTHV VYVAHGKLQL AVPLEKVKEM SNLSLMRTVE SWLRKERDED RRRRQERKAI GLPEHEKQLE GTRVTGDPAR
301: SAVQVMNNGW AAGRLHSTVA GQENFFLSSN RVLRQ

Best Arabidopsis Sequence Match ( AT5G02270.1 )
(BLAST)

001: MAVTEEEKKR NSTVEISGLR FTYPGIDGHP PPGSKPLIED FSITLNSSDR CLLVGSNGAG KTTILKILGG KHMVEPHMVR VLGRSAFHDT GLTSSGDLCY
101: LGGEWRRDVA FAGFEVPIQM DISAEKMIFG VAGIDPQRRD ELIKVLDIDI SWRLHKVSDG QRRRVQICMG LLKPFKVLLL DEITVDLDVL ARADLLKFLR
201: KECEERGATI IYATHIFDGL EDWPTHIVYV ANGKLQLALP MEKVKETSKK SLMRTVESWL RKERDEERKR RKERKANGLP EFETRTEESR VTGDPARMLN
301: NGWAAGRLHS TVAGGEDNFV LSSNRVLR

Arabidopsis Description

ATNAP9Non-intrinsic ABC protein 9 [Source:UniProtKB/TrEMBL;Acc:F4KCB8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.