Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68112 | Canola | cytosol | 88.75 | 94.04 |
| CDX85931 | Canola | cytosol | 88.75 | 94.04 |
| CDY39073 | Canola | cytosol | 93.12 | 93.12 |
| Bra003735.1-P | Field mustard | cytosol | 93.12 | 93.12 |
| Bra008231.1-P | Field mustard | cytosol | 93.12 | 93.12 |
| CDY13521 | Canola | cytosol | 92.5 | 92.5 |
| CDX73212 | Canola | cytosol | 88.12 | 87.58 |
| CDX87650 | Canola | cytosol | 86.88 | 86.34 |
| Bra015801.1-P | Field mustard | cytosol | 86.25 | 85.71 |
| AT4G34210.1 | Thale cress | cytosol | 71.88 | 75.66 |
| AT4G34470.1 | Thale cress | cytosol | 70.62 | 74.34 |
| AT5G42190.1 | Thale cress | cytosol | 78.75 | 73.68 |
| CDX80590 | Canola | cytosol | 71.25 | 70.81 |
| AT3G60010.1 | Thale cress | cytosol | 65.62 | 68.18 |
| AT2G03170.1 | Thale cress | cytosol | 62.5 | 67.11 |
| AT3G21860.1 | Thale cress | cytosol | 63.12 | 66.45 |
| AT1G20140.1 | Thale cress | cytosol | 67.5 | 66.26 |
| AT2G25700.1 | Thale cress | cytosol | 67.5 | 66.26 |
| AT3G21850.1 | Thale cress | cytosol | 63.12 | 66.01 |
| AT3G53060.1 | Thale cress | cytosol | 33.12 | 62.35 |
| AT3G21840.1 | Thale cress | cytosol | 45.62 | 58.4 |
| AT3G60020.1 | Thale cress | cytosol | 55.0 | 57.52 |
| AT3G21830.1 | Thale cress | cytosol | 53.75 | 56.58 |
| AT1G10230.1 | Thale cress | cytosol | 55.0 | 55.7 |
| AT3G25650.1 | Thale cress | cytosol | 60.62 | 54.8 |
| AT2G03190.1 | Thale cress | cytosol | 56.25 | 52.94 |
| AT2G20160.1 | Thale cress | cytosol | 49.38 | 52.67 |
| AT2G03160.1 | Thale cress | cytosol | 57.5 | 46.0 |
Protein Annotations
| MapMan:19.2.2.8.1.1 | PDB:2P1M | PDB:2P1N | PDB:2P1O | PDB:2P1P | PDB:2P1Q |
| Gene3D:3.30.710.10 | PDB:3C6N | PDB:3C6O | PDB:3C6P | PDB:3OGK | PDB:3OGL |
| PDB:3OGM | PDB:5HYW | PDB:5HZG | EntrezGene:843928 | UniProt:A0A178WD95 | ProteinID:AAF26761.1 |
| ProteinID:AEE35780.1 | EMBL:AF059294 | ArrayExpress:AT1G75950 | EnsemblPlantsGene:AT1G75950 | RefSeq:AT1G75950 | TAIR:AT1G75950 |
| RefSeq:AT1G75950-TAIR-G | EnsemblPlants:AT1G75950.1 | TAIR:AT1G75950.1 | EMBL:AY080884 | EMBL:AY113971 | GO:GO:0000226 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005819 | GO:GO:0005829 | GO:GO:0005856 | GO:GO:0005886 |
| GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0007059 | GO:GO:0007154 |
| GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009524 |
| GO:GO:0009719 | GO:GO:0009734 | GO:GO:0009873 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016032 |
| GO:GO:0016043 | GO:GO:0016567 | GO:GO:0019538 | GO:GO:0045910 | GO:GO:0046686 | RefSeq:NP_565123.1 |
| ProteinID:OAP15343.1 | PFAM:PF01466 | PFAM:PF03931 | PIRSF:PIRSF028729 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000014 | PO:PO:0000033 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000223 | PO:PO:0000230 |
| PO:PO:0000258 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0006036 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009001 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020048 | PO:PO:0020100 |
| PO:PO:0020121 | PO:PO:0020127 | PO:PO:0020137 | PO:PO:0020148 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PANTHER:PTHR11165 | PANTHER:PTHR11165:SF89 | UniProt:Q39255 | InterPro:SKP1 | Symbol:SKP1 |
| InterPro:SKP1-like | InterPro:SKP1-like_dim_sf | InterPro:SKP1/BTB/POZ_sf | SMART:SM00512 | SUPFAM:SSF54695 | SUPFAM:SSF81382 |
| InterPro:Skp1_comp_POZ | InterPro:Skp1_comp_dimer | EMBL:U60981 | EMBL:U70034 | EMBL:U97020 | UniParc:UPI00000A5B00 |
| SEG:seg | : | : | : | : | : |
Description
SKP1ASKP1-like protein 1A [Source:UniProtKB/Swiss-Prot;Acc:Q39255]
Coordinates
chr1:+:28516519..28517896
Molecular Weight (calculated)
17858.0 Da
IEP (calculated)
4.167
GRAVY (calculated)
-0.321
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAKKIVLKS SDGESFEVEE AVALESQTIA HMVEDDCVDN GVPLPNVTSK ILAKVIEYCK RHVEAAASKA EAVEGAATSD DDLKAWDADF MKIDQATLFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
101: LILAANYLNI KNLLDLTCQT VADMIKGKTP EEIRTTFNIK NDFTPEEEEE VRRENQWAFE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.