Factsheet for AT5G42190.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT1G75950.1	Thale cress	cytosol	73.68	78.75
VIT_18s0001g14860.t01	Wine grape	cytosol, mitochondrion	80.12	69.54
AT4G34210.1	Thale cress	cytosol	61.4	69.08
AT1G20140.1	Thale cress	cytosol	65.5	68.71
AT3G21860.1	Thale cress	cytosol	60.23	67.76
AT4G34470.1	Thale cress	cytosol	60.23	67.76
AT2G03170.1	Thale cress	cytosol	57.89	66.44
AT2G25700.1	Thale cress	cytosol	62.57	65.64
AT3G21850.1	Thale cress	cytosol	57.89	64.71
AT3G53060.1	Thale cress	cytosol	32.16	64.71
AT3G60010.1	Thale cress	cytosol	57.89	64.29
AT3G21840.1	Thale cress	cytosol	45.03	61.6
AT1G10230.1	Thale cress	cytosol	54.39	58.86
AT3G60020.1	Thale cress	cytosol	52.63	58.82
AT3G21830.1	Thale cress	cytosol	51.46	57.89
AT2G20160.1	Thale cress	cytosol	47.95	54.67
AT2G03190.1	Thale cress	cytosol	52.63	52.94
AT3G25650.1	Thale cress	cytosol	54.39	52.54
AT2G03160.1	Thale cress	cytosol	53.8	46.0

Protein Annotations

MapMan:19.2.2.8.1.1	Gene3D:3.30.710.10	EntrezGene:834224	UniProt:A0A178UBX6	ProteinID:AED94777.1	EMBL:AF059295
EMBL:AK227773	Symbol:ASK2	ArrayExpress:AT5G42190	EnsemblPlantsGene:AT5G42190	RefSeq:AT5G42190	TAIR:AT5G42190
RefSeq:AT5G42190-TAIR-G	EnsemblPlants:AT5G42190.1	TAIR:AT5G42190.1	ProteinID:BAB08452.1	EMBL:BT004798	GO:GO:0000003
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0007059	GO:GO:0007154	GO:GO:0007165
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009719	GO:GO:0009734
GO:GO:0009790	GO:GO:0009791	GO:GO:0009793	GO:GO:0009873	GO:GO:0009987	GO:GO:0016032
GO:GO:0016567	GO:GO:0019538	RefSeq:NP_568603.1	ProteinID:OAO91346.1	PFAM:PF01466	PFAM:PF03931
PIRSF:PIRSF028729	PO:PO:0000013	PO:PO:0000014	PO:PO:0000033	PO:PO:0000037	PO:PO:0000084
PO:PO:0000223	PO:PO:0000230	PO:PO:0000258	PO:PO:0000293	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0006036	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009001	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020048	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PANTHER:PTHR11165	PANTHER:PTHR11165:SF89	UniProt:Q9FHW7
InterPro:SKP1	InterPro:SKP1-like	InterPro:SKP1-like_dim_sf	InterPro:SKP1/BTB/POZ_sf	SMART:SM00512	SUPFAM:SSF54695
SUPFAM:SSF81382	InterPro:Skp1_comp_POZ	InterPro:Skp1_comp_dimer	EMBL:U97021	UniParc:UPI000000C494	SEG:seg

Description

SKP1BSKP1-like protein 1B [Source:UniProtKB/Swiss-Prot;Acc:Q9FHW7]

Coordinates

chr5:-:16854191..16855741

Molecular Weight (calculated)

19098.3 Da

IEP (calculated)

4.238

GRAVY (calculated)

-0.484

Length

171 amino acids

Sequence
(BLAST)

001: MSTVRKITLK SSDGENFEID EAVALESQTI KHMIEDDCTD NGIPLPNVTS KILSKVIEYC KRHVEAAEKS ETTADAAAAT TTTTVASGSS DEDLKTWDSE
101: FIKVDQGTLF DLILAANYLN IKGLLDLTCQ TVADMIKGKT PEEIRKTFNI KNDFTPEEEE EVRRENQWAF E

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.