Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024763.1-P | Field mustard | cytosol | 97.48 | 97.26 |
| CDX84977 | Canola | cytosol | 91.53 | 95.24 |
| CDY36119 | Canola | cytosol | 88.33 | 91.47 |
| CDY51990 | Canola | cytosol | 87.41 | 90.31 |
| CDY72036 | Canola | cytosol | 89.24 | 88.04 |
| CDY66464 | Canola | cytosol | 86.27 | 87.88 |
| AT1G25280.1 | Thale cress | cytosol | 88.1 | 86.52 |
| CDY13913 | Canola | endoplasmic reticulum, extracellular | 5.72 | 83.33 |
| KRH10476 | Soybean | cytosol, mitochondrion | 73.46 | 75.18 |
| VIT_12s0055g00460.t01 | Wine grape | mitochondrion | 72.54 | 74.76 |
| KRH43964 | Soybean | cytosol, mitochondrion | 72.77 | 74.47 |
| Solyc10g046970.1.1 | Tomato | mitochondrion | 71.4 | 73.24 |
| PGSC0003DMT400002858 | Potato | mitochondrion | 71.4 | 73.24 |
| PGSC0003DMT400076537 | Potato | cytosol | 71.17 | 72.83 |
| Solyc01g104670.2.1 | Tomato | cytosol | 70.71 | 72.37 |
| HORVU5Hr1G023650.1 | Barley | plastid | 39.59 | 71.78 |
| CDY45959 | Canola | cytosol | 67.28 | 68.53 |
| CDY13570 | Canola | cytosol | 66.59 | 68.47 |
| GSMUA_Achr9P08860_001 | Banana | cytosol, mitochondrion | 66.82 | 68.22 |
| CDY65845 | Canola | cytosol, mitochondrion | 67.51 | 65.56 |
| CDX87562 | Canola | cytosol, mitochondrion | 67.28 | 65.19 |
| Os12t0163400-01 | Rice | cytosol | 66.36 | 65.17 |
| TraesCS5A01G124100.1 | Wheat | cytosol | 64.76 | 64.46 |
| KXG23034 | Sorghum | cytosol, mitochondrion | 64.07 | 64.07 |
| TraesCS5D01G132000.1 | Wheat | cytosol, mitochondrion | 64.3 | 64.01 |
| TraesCS5B01G123800.1 | Wheat | golgi | 64.07 | 63.78 |
| TraesCS4D01G110100.1 | Wheat | golgi | 63.62 | 63.18 |
| TraesCS4A01G209000.1 | Wheat | cytosol, mitochondrion | 63.39 | 62.95 |
| TraesCS4B01G112600.1 | Wheat | cytosol, mitochondrion | 63.16 | 62.73 |
| CDY10578 | Canola | mitochondrion | 5.95 | 61.9 |
| Zm00001d053179_P001 | Maize | cytosol | 63.39 | 61.83 |
| EES08030 | Sorghum | cytosol, mitochondrion | 62.93 | 60.31 |
| CDY46301 | Canola | cytosol | 51.95 | 60.05 |
| CDY25159 | Canola | cytosol | 51.49 | 60.0 |
| CDY27467 | Canola | cytosol | 51.72 | 56.93 |
| CDY55525 | Canola | cytosol | 52.17 | 56.72 |
| CDY02510 | Canola | cytosol | 41.42 | 56.39 |
| GSMUA_Achr11P... | Banana | cytosol | 52.86 | 55.66 |
| CDY25719 | Canola | cytosol | 41.65 | 55.15 |
| CDY65687 | Canola | cytosol, mitochondrion | 47.14 | 55.08 |
| CDY17085 | Canola | cytosol, mitochondrion | 49.43 | 54.82 |
| CDY05258 | Canola | mitochondrion | 45.08 | 54.72 |
| CDY24698 | Canola | mitochondrion | 44.16 | 54.67 |
| CDY17028 | Canola | mitochondrion, nucleus | 48.97 | 54.18 |
| CDX92589 | Canola | mitochondrion | 43.25 | 50.53 |
| CDY25863 | Canola | cytosol, mitochondrion | 43.48 | 50.4 |
| CDY45927 | Canola | cytosol, plastid | 43.02 | 50.13 |
| CDY13914 | Canola | mitochondrion | 24.49 | 43.85 |
| CDY06747 | Canola | cytosol, mitochondrion | 48.51 | 36.68 |
| CDY35067 | Canola | nucleus | 18.99 | 21.34 |
| CDY69989 | Canola | nucleus | 18.99 | 21.17 |
| CDY17084 | Canola | mitochondrion | 0.23 | 0.49 |
Protein Annotations
| Gene3D:1.20.1280.50 | MapMan:15.5.21 | UniProt:A0A078HXR1 | EnsemblPlants:CDY42119 | ProteinID:CDY42119 | ProteinID:CDY42119.1 |
| InterPro:F-box-like_dom_sf | InterPro:F-box_dom | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSBRNA2T00074293001 |
| InterPro:IPR001810 | InterPro:IPR025659 | PFAM:PF00646 | PFAM:PF01167 | PRINTS:PR01573 | ScanProsite:PS01200 |
| ScanProsite:PS01201 | PANTHER:PTHR16517 | PANTHER:PTHR16517:SF45 | SUPFAM:SSF54518 | SUPFAM:SSF81383 | InterPro:Tubby-like_C |
| InterPro:Tubby_C | InterPro:Tubby_C_CS | UniParc:UPI0004EDE52C | SEG:seg | : | : |
Description
BnaA09g28410DTubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXR1]
Coordinates
chrLK032515:-:236816..239558
Molecular Weight (calculated)
49103.9 Da
IEP (calculated)
9.959
GRAVY (calculated)
-0.373
Length
437 amino acids
Sequence
(BLAST)
(BLAST)
001: MSFRSIVQDL RDGLGSLSKR SFDFRLHKGK GSSFRDYSSS RDLLSPLIVQ TSRWANLPPE LLLDVIRRLE ESESNWPARK HVVACASVCR SWRAMCQEIV
101: LCPEISGKLT FPVSLKQPGP RDTMIQCFIK RDKSKLTFHL YLCLSPALVV ENGKFLLSAK RTRRTTKTEY IISMDADNIS RSSNSYLGKL RSNFLGTKFV
201: VYDTQPPQNT PSSSSALITD QTSRSRFHSK RVSPKLPSGS YNIAHITYEL NVLGTRGPRR MHCVMNSIPT SSLEPGGSVP NQPDKLLPGP LDESFRSNIS
301: FSKSSLDYRS VDFSSSRFSG MGVVAPCEEE QEETSFRPLV LKNKQPRWHE QLQCWCLNFR GRVTVASVKN FQLVAARQPP TQGAAAAAPS HPEQEKVILQ
401: FGKVGKDMFT MDYRYPLSAF QAFAICLSSF DTKLACE
101: LCPEISGKLT FPVSLKQPGP RDTMIQCFIK RDKSKLTFHL YLCLSPALVV ENGKFLLSAK RTRRTTKTEY IISMDADNIS RSSNSYLGKL RSNFLGTKFV
201: VYDTQPPQNT PSSSSALITD QTSRSRFHSK RVSPKLPSGS YNIAHITYEL NVLGTRGPRR MHCVMNSIPT SSLEPGGSVP NQPDKLLPGP LDESFRSNIS
301: FSKSSLDYRS VDFSSSRFSG MGVVAPCEEE QEETSFRPLV LKNKQPRWHE QLQCWCLNFR GRVTVASVKN FQLVAARQPP TQGAAAAAPS HPEQEKVILQ
401: FGKVGKDMFT MDYRYPLSAF QAFAICLSSF DTKLACE
001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE
Arabidopsis Description
TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.