Factsheet for Solyc01g104670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400076537	Potato	cytosol	99.3	99.3
Solyc10g046970.1.1	Tomato	mitochondrion	86.65	86.85
VIT_12s0055g00460.t01	Wine grape	mitochondrion	84.78	85.38
KRH10476	Soybean	cytosol, mitochondrion	84.54	84.54
KRH43964	Soybean	cytosol, mitochondrion	84.31	84.31
HORVU5Hr1G023650.1	Barley	plastid	45.9	81.33
Solyc04g071440.2.1	Tomato	mitochondrion	78.92	79.11
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	75.41	75.23
CDX84977	Canola	cytosol	70.96	72.14
CDY66464	Canola	cytosol	71.9	71.56
CDY36119	Canola	cytosol	70.49	71.33
CDY51990	Canola	cytosol	70.49	71.16
CDY42119	Canola	cytosol	72.37	70.71
CDY72036	Canola	cytosol	73.3	70.65
Bra012486.1-P	Field mustard	cytosol	73.3	70.65
KXG23034	Sorghum	cytosol, mitochondrion	72.13	70.48
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	72.6	70.45
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	72.6	70.45
TraesCS4D01G110100.1	Wheat	golgi	72.6	70.45
Bra010985.1-P	Field mustard	cytosol	72.37	70.39
AT1G25280.1	Thale cress	cytosol	73.3	70.34
Bra024763.1-P	Field mustard	cytosol	72.13	70.32
Os12t0163400-01	Rice	cytosol	72.83	69.89
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	71.43	69.48
TraesCS5A01G124100.1	Wheat	cytosol	71.43	69.48
TraesCS5B01G123800.1	Wheat	golgi	71.19	69.25
Zm00001d053179_P001	Maize	cytosol	68.62	65.4
EES08030	Sorghum	cytosol, mitochondrion	67.92	63.6
GSMUA_Achr11P...	Banana	cytosol	59.02	60.72
Solyc09g074510.2.1	Tomato	cytosol	54.57	58.84
Solyc04g071750.2.1	Tomato	cytosol	52.93	56.5
Solyc03g033980.2.1	Tomato	cytosol	53.63	56.4
Solyc02g062670.2.1	Tomato	cytosol	54.1	56.2
Solyc02g085130.2.1	Tomato	cytosol	53.4	55.47
Solyc07g062390.2.1	Tomato	mitochondrion	45.9	50.78
Solyc01g067680.2.1	Tomato	cytosol	27.63	47.39
Solyc03g117730.2.1	Tomato	cytosol	22.25	23.4

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	Gene3D:3.20.90.10	InterPro:F-box-like_dom_sf	InterPro:F-box_dom	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0008289	GO:GO:0035091	InterPro:IPR001810	InterPro:IPR025659
UniProt:K4B241	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	EnsemblPlantsGene:Solyc01g104670.2	EnsemblPlants:Solyc01g104670.2.1
InterPro:Tubby-like_C	InterPro:Tubby_C	InterPro:Tubby_C_CS	UniParc:UPI0002768B7C	SEG:seg	:

Description

Tubby-like F-box protein [Source:UniProtKB/TrEMBL;Acc:K4B241]

Coordinates

chr1:-:93090503..93093382

Molecular Weight (calculated)

47797.1 Da

IEP (calculated)

9.537

GRAVY (calculated)

-0.405

Length

427 amino acids

Sequence
(BLAST)

001: MSFRSIVRDV RDSIGSLSRR SFDLRLSGHP RDKSHGSFYD LSDQPPVIQD SCWANLPPEL LFDVVRRLEE SESTWPGRKH VVACAAVCRS WRSMCKDIVR
101: NPEFCGKLTF PVSLKQPGPR DGTIQCFIKR DKSNLTYHLF LCLSPALLVE NGKFLLSAKR TRRTTCTEYV ISMDAENISR SSNTYIGKLR SNFLGTKFII
201: YDTQPPHTGA HVPPPGRTSR RFTSKKVSPK VPTGSYIISQ ITYELNVLGT RGPRRMHCVM HSIPDSALEA GGSVPGQPEL LSRPLEDSFR SISFSKSLDH
301: STEFGSARFS DIAGGSTNEE DDNKGKPLVL KNKAPRWHEQ LQCWCLNFRG RVTVASVKNF QLIAATQQPA AAPTTSQPTS QSDHDKIILQ FGKVGKDMFT
401: MDYRYPLSAF QAFAICLSSF DTKLACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.