Factsheet for Bra012486.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
nucleus 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003735.1-P
Bra008231.1-P
Bra015801.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G25280.1	Bra003735.1-P	AT1G75950.1	12795696
AT1G25280.1	Bra008231.1-P	AT1G75950.1	12795696
AT1G25280.1	Bra015801.1-P	AT1G75950.1	12795696
AT1G25280.1	Bra003735.1-P	AT1G75950.1	25168737
AT1G25280.1	Bra008231.1-P	AT1G75950.1	25168737
AT1G25280.1	Bra015801.1-P	AT1G75950.1	25168737

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72036	Canola	cytosol	99.77	99.77
CDY66464	Canola	cytosol	96.39	99.53
Bra010985.1-P	Field mustard	cytosol	89.84	90.66
Bra024763.1-P	Field mustard	cytosol	89.39	90.41
AT1G25280.1	Thale cress	cytosol	90.29	89.89
VIT_12s0055g00460.t01	Wine grape	mitochondrion	73.14	76.42
KRH10476	Soybean	cytosol, mitochondrion	72.91	75.64
KRH43964	Soybean	cytosol, mitochondrion	72.23	74.94
Solyc10g046970.1.1	Tomato	mitochondrion	71.78	74.65
PGSC0003DMT400002858	Potato	mitochondrion	71.56	74.41
PGSC0003DMT400076537	Potato	cytosol	70.88	73.54
Solyc01g104670.2.1	Tomato	cytosol	70.65	73.3
HORVU5Hr1G023650.1	Barley	plastid	39.28	72.2
GSMUA_Achr9P08860_001	Banana	cytosol, mitochondrion	67.27	69.63
Bra040803.1-P	Field mustard	cytosol	68.62	68.01
KXG23034	Sorghum	cytosol, mitochondrion	64.33	65.22
Os12t0163400-01	Rice	cytosol	65.46	65.17
Bra015711.1-P	Field mustard	cytosol, mitochondrion	67.49	64.3
TraesCS5A01G124100.1	Wheat	cytosol	63.43	64.01
TraesCS5D01G132000.1	Wheat	cytosol, mitochondrion	63.21	63.78
TraesCS5B01G123800.1	Wheat	golgi	62.75	63.33
TraesCS4A01G209000.1	Wheat	cytosol, mitochondrion	62.53	62.95
TraesCS4D01G110100.1	Wheat	golgi	62.53	62.95
TraesCS4B01G112600.1	Wheat	cytosol, mitochondrion	62.3	62.73
Zm00001d053179_P001	Maize	cytosol	61.85	61.16
EES08030	Sorghum	cytosol, mitochondrion	61.17	59.43
Bra039620.1-P	Field mustard	cytosol	48.76	57.14
Bra021446.1-P	Field mustard	cytosol	51.24	56.47
GSMUA_Achr11P...	Banana	cytosol	52.14	55.66
Bra015624.1-P	Field mustard	cytosol, mitochondrion	50.56	55.58
Bra040862.1-P	Field mustard	mitochondrion, nucleus	49.44	55.3
Bra020754.1-P	Field mustard	cytosol	42.21	54.36
Bra041095.1-P	Field mustard	cytosol, mitochondrion	41.99	49.34
Bra002179.1-P	Field mustard	mitochondrion	43.79	48.62
Bra030942.1-P	Field mustard	mitochondrion	41.53	46.94
Bra026081.1-P	Field mustard	nucleus	18.28	20.82

Protein Annotations

Gene3D:1.20.1280.50	MapMan:15.5.21	EnsemblPlantsGene:Bra012486	EnsemblPlants:Bra012486.1	EnsemblPlants:Bra012486.1-P	InterPro:F-box-like_dom_sf
InterPro:F-box_dom	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001810	InterPro:IPR025659
UniProt:M4D7M6	PFAM:PF00646	PFAM:PF01167	PRINTS:PR01573	ScanProsite:PS01200	ScanProsite:PS01201
PANTHER:PTHR16517	PANTHER:PTHR16517:SF45	SUPFAM:SSF54518	SUPFAM:SSF81383	InterPro:Tubby-like_C	InterPro:Tubby_C
InterPro:Tubby_C_CS	UniParc:UPI0002541245	SEG:seg	:	:	:

Description

AT1G25280 (E=2e-211) AtTLP10 | AtTLP10 (TUBBY LIKE PROTEIN 10); phosphoric diester hydrolase/ transcription factor

Coordinates

chrA07:+:7264476..7266071

Molecular Weight (calculated)

49827.6 Da

IEP (calculated)

10.038

GRAVY (calculated)

-0.388

Length

443 amino acids

Sequence
(BLAST)

001: MSFRSIVQDL RDGLGSLSRR SFDFRLHHKG KSHGSSFREY SSSLDLSPLI VQTSRWANLP PELLLDVIKR LEESESNWPA RKHVVACASV CRSWRAMCQE
101: IVLCPEISGK LTFPVSLKQP GPRDAMIQCF IKRDKSKLTF HLFLCLSPAL IVENGKFLLS AKRTRRTTRT EYIISMDAEN ISRSSNSYLG KLRSNFLGTK
201: FLVYDTQPPP DTSSSSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPTSSLEPGG SVPNQPEKLL PPPPRSFDDS
301: FRSNISFSKS SFDHRSVDFS SSRFSEMGVS CEEDQGETSF KPLVLKNKQP RWHEQLQCWC LNFRGRVTVA SVKNFQLVAV RQPPPTQVAG SSAPAAPPEQ
401: DKVILQFGKV GKDMFTMDYR YPLSAFQAFA ICLSSFDTKL ACE

Best Arabidopsis Sequence Match ( AT1G25280.1 )
(BLAST)

001: MSFRGIVQDL RDGFGSLSRR SFDFRLSSLH KGKAQGSSFR EYSSSRDLLS PVIVQTSRWA NLPPELLFDV IKRLEESESN WPARKHVVAC ASVCRSWRAM
101: CQEIVLGPEI CGKLTFPVSL KQPGPRDAMI QCFIKRDKSK LTFHLFLCLS PALLVENGKF LLSAKRTRRT TRTEYIISMD ADNISRSSNS YLGKLRSNFL
201: GTKFLVYDTQ PPPNTSSSAL ITDRTSRSRF HSRRVSPKVP SGSYNIAQIT YELNVLGTRG PRRMHCIMNS IPISSLEPGG SVPNQPEKLV PAPYSLDDSF
301: RSNISFSKSS FDHRSLDFSS SRFSEMGISC DDNEEEASFR PLILKNKQPR WHEQLQCWCL NFRGRVTVAS VKNFQLVAAR QPQPQGTGAA AAPTSAPAHP
401: EQDKVILQFG KVGKDMFTMD YRYPLSAFQA FAICLSSFDT KLACE

Arabidopsis Description

TULP10Tubby-like F-box protein 10 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRH7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.